View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2848_low_93 (Length: 223)
Name: NF2848_low_93
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_low_93 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 26 - 208
Target Start/End: Original strand, 43842878 - 43843060
Alignment:
| Q |
26 |
gagttattaatatcattaccagattttaaccatagcatgaacaatccattggaaaatgacatatgtaactgtccacaggcaaaagtatcctattcgaaac |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43842878 |
gagttattaatatcattaccagattttaaccatagcatgaacaatccattggaaaatgacatatgtaactgtccacaggcaaaagtatcctattcgaaac |
43842977 |
T |
|
| Q |
126 |
caagggaacctctaaagaggnnnnnnnntaaacaagggtaagaattcacatatgcatggaagtatacaattcaatgtaataat |
208 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43842978 |
caagggaacctctaaagaggaaaaaaaataaacaagggtaagaattcacatatgcatggaagtatacaattcaatgtaataat |
43843060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 34892904 - 34892978
Alignment:
| Q |
59 |
agcatgaacaatccattggaaaatgacatatgtaactgtccacaggcaaaagtatcctattcgaaaccaagggaa |
133 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||| | |||||||||||| ||||||||||||||||| |
|
|
| T |
34892904 |
agcatgaacaatccattggaaaatcacatatgcgactgtccataagcaaaagtatcccattcgaaaccaagggaa |
34892978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University