View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2848_low_96 (Length: 220)
Name: NF2848_low_96
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_low_96 |
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Alignment Details
Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 24887507 - 24887563
Alignment:
| Q |
99 |
tatatatattcaatattagatcggtacctatatagtggaggtaacaatctggaaaaa |
155 |
Q |
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| T |
24887507 |
tatatatattcaatattagatcggtacctatatagtggaggtaacaatctggaaaaa |
24887563 |
T |
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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 24887429 - 24887478
Alignment:
| Q |
11 |
gaagaatattggtacgtatgtatgtttattactttcactgcatctgaatctcac |
64 |
Q |
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| T |
24887429 |
gaagaatattggtacgtat----gtttattacttttactgcatctgaatctcac |
24887478 |
T |
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