View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2848_low_97 (Length: 207)
Name: NF2848_low_97
Description: NF2848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2848_low_97 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 12285392 - 12285564
Alignment:
| Q |
17 |
gagatcctatcgattcttctatttgctcttgactccaaatattttgtttagcctactatacctaaatatattttaccttaccttagcctcattataacct |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12285392 |
gagatcctatcgattcttctatttgctcttgactccaaatattttgtttagcctactatacctaaatatattttaccttacgttagcctcattataacct |
12285491 |
T |
|
| Q |
117 |
ttaaagacttctaaaatgtgtatgatcgtacttggctttgaatgacaatttaaaatatctccaagtttatagg |
189 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12285492 |
ttaaagacttctaaaatgtgtatggtcgtacttggctttgaatgacaatttaaaatatctccaagtttatagg |
12285564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University