View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2850_high_2 (Length: 508)
Name: NF2850_high_2
Description: NF2850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2850_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 29690155 - 29690477
Alignment:
| Q |
1 |
ccctacaagcacatgaaaaggatacaagcttcattaaagcaagggaggtttgatacttgatcgtgttcatgcatttgtacaaaccggttcctaaagaaga |
100 |
Q |
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| T |
29690155 |
ccctacaagcacatgaaaaggatacaagcttcattaaagcaagggaggtttgatgcttgatcttgttcatgcatttgtacaaaccggttcctaaagaaga |
29690254 |
T |
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| Q |
101 |
gtagaaaaatgtttgttcgaggcattgtggattgcacaatcttaagtgatgaaaacaaacgtaattaaacaattagaaaatgagaatcttgatttactat |
200 |
Q |
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| T |
29690255 |
gtagaaaaatgtttgttcgaggcattgtggattgcacaatcttaagtgatgaaaacaaacgtaattaaacaattagaaaatgagaatcttgatttactat |
29690354 |
T |
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| Q |
201 |
cnnnnnnnngacaaaaatcttgatttactatcttacttctccaactcaactttacaataataatgaaccaaccctaagtaattaaacaactcaacttttc |
300 |
Q |
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| T |
29690355 |
cttttttttgacaaaaatcttgatttactatcttacttctccaactcaactttacaataataatgaaccaaccctaagtaattaaacaactcaacttttc |
29690454 |
T |
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| Q |
301 |
tcatgttaaattgtttctttttt |
323 |
Q |
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| T |
29690455 |
tcatgttaaattgtttctttttt |
29690477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 357 - 494
Target Start/End: Original strand, 29690514 - 29690651
Alignment:
| Q |
357 |
caatttaacgtgagaaatgactctattaatcattcatggctcattgacaccatgtgattgcgtaagaatctaagggaccaaatcgggagcttctgcatat |
456 |
Q |
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| T |
29690514 |
caatttaacgtgagaaatgactctattaatcattcatggctcattgacaccatgtgattgcgtaagaatctaagggaccaaattgggagcttctgcatat |
29690613 |
T |
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| Q |
457 |
tgataaattgaagtgtttggatacatcatccgtttata |
494 |
Q |
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| T |
29690614 |
tgataaattgaagtgtttggatacatcatccgtttata |
29690651 |
T |
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