View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2850_low_1 (Length: 564)
Name: NF2850_low_1
Description: NF2850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2850_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 535; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 1 - 547
Target Start/End: Original strand, 39934002 - 39934548
Alignment:
| Q |
1 |
tatgtcacaaataatctacatcaagaaactgaatttaggaactagattgagagaaaggtactgaagaaattaatgacaatttatgatttctcatctaagt |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39934002 |
tatgtcacaaataatctacatccagaaactgaatttaggaactagattgagagaaaggtactgaagaaattaatgacaatttatgatttctcatctaagt |
39934101 |
T |
|
| Q |
101 |
gaaaatgtgacatcatacatgtatttatagctacatagatgtgtaacagtactctaactaactttctacattggtttactaactgtaactaattacaaca |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39934102 |
gacaatgtgacatcatacatgtatttatagctacatagatgtgtaacagtactctaactaactttctacattggtttactaactgtaactaattacaaca |
39934201 |
T |
|
| Q |
201 |
cgctaactagcctcatcaatgtttgttagatcagtaacttgttgtgcaagtcactaagaattgctacatatcttgacagtctttttcatagaatgtagga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39934202 |
cgctaactagcctcatcaatgtttgttagatcagtaacttgttgtgcaagtcactaagaattgctacatatcttgacagtctttttcatagaatgtagga |
39934301 |
T |
|
| Q |
301 |
gagaagaacttatcatcattatcacttattccaaccataacaatatcatttatcatcatttcaaatcttcttaaatatcttcatatttgtaagaaataga |
400 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39934302 |
gagaagaacgtatcatcattatcacttattccaaccataacaatatcatttatcatcatttcaaatcttcttaaatatcttcatatttgtaagaaataga |
39934401 |
T |
|
| Q |
401 |
gcacagtaaataatacacaaagttgatagctccaaacacgactaacatccaatacacattatcaaccttgccatgatttatttcatcaggtaaccaatca |
500 |
Q |
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| T |
39934402 |
gcacagtaaataatacacaaagttgatagctccaaacacgactaacatccaatacacattatcaaccttgccatgatttatttcatcaggtaaccaatca |
39934501 |
T |
|
| Q |
501 |
gtactcctacgaacttggtcaattaaagcagtgctcaagtaaaaagc |
547 |
Q |
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| T |
39934502 |
gtactcctacgaacttggtcaattaaagcagtgctcaagtaaaaagc |
39934548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 369 - 547
Target Start/End: Complemental strand, 39704652 - 39704474
Alignment:
| Q |
369 |
tcttaaatatcttcatatttgtaagaaatagagcacagtaaataatacacaaagttgatagctccaaacacgactaacatccaatacacattatcaacct |
468 |
Q |
| |
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||||||| || |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
39704652 |
tcttaaacattttcatacttgtaagaaatagagcacagtaagtaatacacaaagttgatagctccaaacatgaccaacatccaatacacattatcaacct |
39704553 |
T |
|
| Q |
469 |
tgccatgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaagtaaaaagc |
547 |
Q |
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| T |
39704552 |
tgccatgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaaataaaaagc |
39704474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 380 - 547
Target Start/End: Complemental strand, 39695732 - 39695565
Alignment:
| Q |
380 |
ttcatatttgtaagaaatagagcacagtaaataatacacaaagttgatagctccaaacacgactaacatccaatacacattatcaaccttgccatgattt |
479 |
Q |
| |
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|||||| ||||||||||||||||||| || |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39695732 |
ttcatacttgtaagaaatagagcacaataggtaatacacaaagttgatacctccaaacactactaacatccaatacacattatcaaccttgccatgattt |
39695633 |
T |
|
| Q |
480 |
atttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaagtaaaaagc |
547 |
Q |
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| T |
39695632 |
atttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaaataaaaagc |
39695565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 347 - 547
Target Start/End: Original strand, 39928701 - 39928901
Alignment:
| Q |
347 |
catttatcatcatttcaaatcttcttaaatatcttcatatttgtaagaaatagagcacagtaaataatacacaaagttgatagctccaaacacgactaac |
446 |
Q |
| |
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|||||||||| | ||| ||| ||||||| || |||||| ||||||| | ||| || | ||| |||||||||||||| ||| | || | | ||||||| |
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| T |
39928701 |
catttatcataacatcacatcctcttaaacattttcatacttgtaaggagaagaacaaaataagtaatacacaaagtttatacccccgagtaggactaac |
39928800 |
T |
|
| Q |
447 |
atccaatacacattatcaaccttgccatgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaagtaaaaag |
546 |
Q |
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| T |
39928801 |
atccagtacacattgtcaatcttcccatgatttatgtcatcaggtaaccaatcagtactcctacgaacttgatcaattaatgcattgctcatgtaaaaag |
39928900 |
T |
|
| Q |
547 |
c |
547 |
Q |
| |
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| |
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|
| T |
39928901 |
c |
39928901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 282 - 322
Target Start/End: Original strand, 39928648 - 39928688
Alignment:
| Q |
282 |
tttttcatagaatgtaggagagaagaacttatcatcattat |
322 |
Q |
| |
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||||||||||||||||||||| |||||||||| | |||||| |
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| T |
39928648 |
tttttcatagaatgtaggagaaaagaacttattaccattat |
39928688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 471 - 547
Target Start/End: Original strand, 38059050 - 38059126
Alignment:
| Q |
471 |
ccatgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaagtaaaaagc |
547 |
Q |
| |
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||||||||||| ||||| |||||||||| |||| ||||| | | |||||||| ||||| ||||||||||| |||||| |
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| T |
38059050 |
ccatgatttatgtcatctggtaaccaattagtaatcctatggatttggtcaactaaagtagtgctcaagttaaaagc |
38059126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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