View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2850_low_3 (Length: 458)
Name: NF2850_low_3
Description: NF2850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2850_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 703633 - 704071
Alignment:
| Q |
1 |
ttcatccctttatttcaaaccaaacaaatcttaacccatagttgatttatacccaacaacatatatgctta-tatacaaatctctgacaaacttccaaat |
99 |
Q |
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| T |
703633 |
ttcatccctttatttcaaaccaaacaaatcttaacccatagttgatttatacccaaca---tatatgctttgtatacaaatctctgacaaacttccaaat |
703729 |
T |
|
| Q |
100 |
gcaaaatccttcttctctcttctacggttagtgttagtgccacagagaataacaacaaattgcactcaccctcactcaaggtaatccttcttaaagggac |
199 |
Q |
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| T |
703730 |
gcaaaatccttcttctctcttctacggttagtgttagtgccacagagaataacaacaaattgccctcacccccactcaaggtaatcctttttgaagtgat |
703829 |
T |
|
| Q |
200 |
tggtcttatgacaccgaaagctgttatacttgtgtttaccattttcacaaatttcttcccatgaccaaaatattcaatgatttcacatttaagttgtttc |
299 |
Q |
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|| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
703830 |
tgatcttatgacactgaaagctattatacttgtgtttaccattttcacaaatttcttcccatgaccaaaatattcaatgatttcacatttaaggtgtttc |
703929 |
T |
|
| Q |
300 |
aaaaccatataattcatcacaagcgcccttagtctttaaactattaactccctagaggttttctcttttggtatctctaagttttccttttaccacacac |
399 |
Q |
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|||||||||||||||||||||| ||| | || ||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
703930 |
aaaaccatataattcatcacaaacgctcgtaatctttaaactattgattccctagaggttttctcttttagtatctctaagttttccttttaccacacac |
704029 |
T |
|
| Q |
400 |
aaaaccctaacacatatgtcttctatttataggatttgtcca |
441 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| |
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| T |
704030 |
aaaaccctaacacatatgtcttctattcataggatttgtcca |
704071 |
T |
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