View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2850_low_4 (Length: 407)

Name: NF2850_low_4
Description: NF2850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2850_low_4
NF2850_low_4
[»] chr3 (21 HSPs)
chr3 (222-331)||(31282329-31282438)
chr3 (34-117)||(31282574-31282657)
chr3 (222-306)||(55423609-55423693)
chr3 (106-190)||(31282470-31282554)
chr3 (34-117)||(55423390-55423473)
chr3 (27-117)||(31280959-31281049)
chr3 (117-190)||(55423504-55423577)
chr3 (36-117)||(55425641-55425722)
chr3 (35-117)||(46496863-46496945)
chr3 (232-329)||(46495722-46495821)
chr3 (36-93)||(46495493-46495550)
chr3 (110-190)||(46495598-46495678)
chr3 (36-107)||(17029658-17029729)
chr3 (36-117)||(21515260-21515340)
chr3 (22-100)||(30155735-30155815)
chr3 (28-117)||(40896785-40896874)
chr3 (299-331)||(55424357-55424389)
chr3 (124-190)||(21515543-21515609)
chr3 (38-100)||(40892156-40892218)
chr3 (130-186)||(21128046-21128102)
chr3 (130-186)||(43346386-43346442)
[»] chr4 (14 HSPs)
chr4 (222-331)||(28656909-28657018)
chr4 (35-117)||(28657185-28657267)
chr4 (106-190)||(28657050-28657134)
chr4 (34-117)||(28655567-28655650)
chr4 (222-320)||(11243549-11243649)
chr4 (35-101)||(11243806-11243872)
chr4 (35-117)||(20825434-20825515)
chr4 (110-171)||(11243705-11243766)
chr4 (121-190)||(9791706-9791775)
chr4 (124-190)||(2162727-2162793)
chr4 (35-101)||(20827578-20827644)
chr4 (148-186)||(56000426-56000464)
chr4 (149-186)||(1188986-1189023)
chr4 (122-190)||(10168714-10168783)
[»] chr1 (10 HSPs)
chr1 (27-117)||(2628301-2628391)
chr1 (38-93)||(13875104-13875159)
chr1 (232-327)||(13876439-13876536)
chr1 (35-93)||(43356945-43357003)
chr1 (38-101)||(43356839-43356902)
chr1 (121-190)||(21507180-21507249)
chr1 (148-190)||(11661712-11661754)
chr1 (52-117)||(10579652-10579717)
chr1 (130-187)||(51299404-51299461)
chr1 (130-190)||(8092719-8092779)
[»] chr6 (5 HSPs)
chr6 (105-190)||(7312215-7312300)
chr6 (110-190)||(24756986-24757066)
chr6 (52-117)||(6889079-6889144)
chr6 (52-116)||(5645562-5645626)
chr6 (52-120)||(8286387-8286455)
[»] chr2 (5 HSPs)
chr2 (26-101)||(2717834-2717909)
chr2 (34-117)||(28544991-28545074)
chr2 (123-190)||(2277401-2277468)
chr2 (124-190)||(18971228-18971294)
chr2 (124-190)||(34147254-34147320)
[»] scaffold0176 (1 HSPs)
scaffold0176 (36-93)||(16038-16095)
[»] chr8 (7 HSPs)
chr8 (232-326)||(42836084-42836180)
chr8 (235-302)||(3138680-3138747)
chr8 (121-190)||(3138793-3138862)
chr8 (124-190)||(42100039-42100105)
chr8 (124-190)||(45395085-45395151)
chr8 (52-117)||(21524634-21524699)
chr8 (123-159)||(42835976-42836012)
[»] chr7 (4 HSPs)
chr7 (110-190)||(7354608-7354688)
chr7 (52-117)||(39383821-39383886)
chr7 (261-302)||(43460642-43460683)
chr7 (37-117)||(29861496-29861576)
[»] chr5 (8 HSPs)
chr5 (130-186)||(12830877-12830933)
chr5 (130-186)||(12862857-12862913)
chr5 (124-190)||(32757943-32758009)
chr5 (52-117)||(1155980-1156045)
chr5 (52-117)||(14858552-14858617)
chr5 (52-117)||(36442236-36442301)
chr5 (52-117)||(42382150-42382215)
chr5 (130-186)||(15856654-15856710)
[»] scaffold0128 (1 HSPs)
scaffold0128 (149-190)||(22123-22164)


Alignment Details
Target: chr3 (Bit Score: 98; Significance: 4e-48; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 222 - 331
Target Start/End: Complemental strand, 31282438 - 31282329
Alignment:
Q  222 caaaaaagaaacggctagatcatttaaatatatcgtatattacaatgaaccatcaacacgtaactttttctccttttcttccttccaccctcatttcttc 321  Q
    |||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31282438 caaaaaaggaacggctagatcatttaagtatatcgtatgttacaatgaaccatcaacacgtaactttttctccttttcttccttccaccctcatttcttc 31282339  T
Q  322 atcattttaa 331  Q
    ||||||||||    
T  31282338 atcattttaa 31282329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 34 - 117
Target Start/End: Complemental strand, 31282657 - 31282574
Alignment:
Q  34 taggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 117  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31282657 taggcttaattatataaatggtccctcaacttatttgttgttttcgatatggtcccttaattctaaaaattttcattttggtcc 31282574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 222 - 306
Target Start/End: Original strand, 55423609 - 55423693
Alignment:
Q  222 caaaaaagaaacggctagatcatttaaatatatcgtatattacaatgaaccatcaacacgtaactttttctccttttcttccttc 306  Q
    |||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  55423609 caaaaaaggaacggctagatcatttaagtatatcgtatgttacaatgaaccatcaacacgtaactttttctccttttcttccttc 55423693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 106 - 190
Target Start/End: Complemental strand, 31282554 - 31282470
Alignment:
Q  106 tcattttggtccatttcagttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 190  Q
    |||||||  ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31282554 tcattttaatccatttcagttaacttcaaccccaaatatcttaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 31282470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 34 - 117
Target Start/End: Original strand, 55423390 - 55423473
Alignment:
Q  34 taggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 117  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||    
T  55423390 taggcttaattatataaatggtcactcaacttatttgttgttttcgatatggtcccttatttctaaaaaatttcattttggtcc 55423473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 31280959 - 31281049
Alignment:
Q  27 taaaagataggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 117  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||    
T  31280959 taaaagttaggcttaattacataaatggtccctcaacttatttgttgttttcgatatggtcccttaattctaaacttttccattttggtcc 31281049  T

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Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 55423504 - 55423577
Alignment:
Q  117 catttcagttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 190  Q
    ||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  55423504 catttcagttaacttcaaccccaaatgtcttaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 55423577  T

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Target: chr3; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 55425722 - 55425641
Alignment:
Q  36 ggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 117  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||    
T  55425722 ggcttaattacataaatggtccctcaacttatttgttgttttcgatatggtcccttaattctaaacttttccattttggtcc 55425641  T

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Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 46496945 - 46496863
Alignment:
Q  35 aggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 117  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||| | |||||| ||||| ||||||||    
T  46496945 aggcttaattacataaatggtccctcaacttatttgttgttttcgatttggtcccttaactttaaaaaatttcaatttggtcc 46496863  T

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Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 329
Target Start/End: Original strand, 46495722 - 46495821
Alignment:
Q  232 acggctagatcatttaaatatatcgtatattacaatgaaccatcaacacgtaactttttctccttttcttc--cttccaccctcatttcttcatcatttt 329  Q
    ||||||||||||| ||  |||||||||| ||||| |||| ||||||||| ||| |||||||||||||||||  |||| |||||| |||||||| ||||||    
T  46495722 acggctagatcatataggtatatcgtatgttacagtgaatcatcaacacataattttttctccttttcttcgtcttctaccctcctttcttcaacatttt 46495821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 46495493 - 46495550
Alignment:
Q  36 ggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaa 93  Q
    |||||||||| |||||| |||||||||||||||||||| ||||||| |||||||||||    
T  46495493 ggcttaattacataaattgtccctcaacttatttgttgttttcgatttggtcccttaa 46495550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 46495598 - 46495678
Alignment:
Q  110 tttggtccatttcagttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 190  Q
    |||| ||||| |||||||||||||| ||||||| |  |||||| |||||| |||||||||||||| | |||||||||||||    
T  46495598 tttgatccatgtcagttaactttaaacccaaatgtattaggtgaaccaacattgtaggtggtccatcatagaccttattaa 46495678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 17029658 - 17029729
Alignment:
Q  36 ggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttc 107  Q
    |||||||||| ||||||||||||  ||||||||||||  ||||||| ||||||||||||| |||||| ||||    
T  17029658 ggcttaattacataaatggtcccataacttatttgttcttttcgatttggtcccttaattttaaaaaatttc 17029729  T

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Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 21515260 - 21515340
Alignment:
Q  36 ggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 117  Q
    |||||||||| ||||||| ||||| ||||||||||||| ||||||| |||| |||||| |||||||| ||||  ||||||||    
T  21515260 ggcttaattacataaatgatcccttaacttatttgttgttttcgatttggt-ccttaactctaaaaaatttccgtttggtcc 21515340  T

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Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 30155735 - 30155815
Alignment:
Q  22 gataataaaagataggctta--attatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaa 100  Q
    |||||||||| |||||||||  |||||||||||||||| | ||||||||||||| ||| ||| | ||| ||||||| ||||    
T  30155735 gataataaaatataggcttataattatataaatggtcctttaacttatttgttgtttttgatttagtctcttaattttaaa 30155815  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 117
Target Start/End: Complemental strand, 40896874 - 40896785
Alignment:
Q  28 aaaagataggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 117  Q
    |||| ||||||||| | | ||| ||||||| | ||||||||||||| ||| ||| |||| ||||||||||||||| ||||  ||||||||    
T  40896874 aaaatataggcttagtaacatagatggtcctttaacttatttgttgtttttgatttggttccttaattctaaaaaatttccatttggtcc 40896785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 331
Target Start/End: Original strand, 55424357 - 55424389
Alignment:
Q  299 cttccttccaccctcatttcttcatcattttaa 331  Q
    |||||||||||||||||||||||||||||||||    
T  55424357 cttccttccaccctcatttcttcatcattttaa 55424389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 21515609 - 21515543
Alignment:
Q  124 gttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 190  Q
    |||||||||||| |||||| |  |||||||| |||  |||||||||||||||| || ||||||||||    
T  21515609 gttaactttaactccaaatgtattaggtggatcaatattgtaggtggtccaccatataccttattaa 21515543  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 40892156 - 40892218
Alignment:
Q  38 cttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaa 100  Q
    ||||||||||||||||||| || ||||||||| ||| |||| || || |||||||||| ||||    
T  40892156 cttaattatataaatggtctcttaacttatttcttgttttcaatttgatcccttaattttaaa 40892218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 21128046 - 21128102
Alignment:
Q  130 tttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagacctta 186  Q
    |||||||| |||| ||  |||||||||||| || ||||||||||||| |||||||||    
T  21128046 tttaaccctaaatgtctaaggtggaccaacattataggtggtccaccatagacctta 21128102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 43346442 - 43346386
Alignment:
Q  130 tttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagacctta 186  Q
    |||||||| |||| ||  |||||||||||| || ||||||||||||| |||||||||    
T  43346442 tttaaccctaaatgtctaaggtggaccaacattataggtggtccaccatagacctta 43346386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 9e-46; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 222 - 331
Target Start/End: Complemental strand, 28657018 - 28656909
Alignment:
Q  222 caaaaaagaaacggctagatcatttaaatatatcgtatattacaatgaaccatcaacacgtaactttttctccttttcttccttccaccctcatttcttc 321  Q
    |||||||| |||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28657018 caaaaaaggaacggctagatcatttaagtatattgtatgttacaatgaaccatcaacacgtaactttttctccttttcttccttccaccctcatttcttc 28656919  T
Q  322 atcattttaa 331  Q
    ||||||||||    
T  28656918 atcattttaa 28656909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 28657267 - 28657185
Alignment:
Q  35 aggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 117  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| |||||||||||    
T  28657267 aggcttaattatataaatggtccctcaatttatttgttgttttcgatatggtcccttaattctaaaattttccattttggtcc 28657185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 106 - 190
Target Start/End: Complemental strand, 28657134 - 28657050
Alignment:
Q  106 tcattttggtccatttcagttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 190  Q
    |||||||  |||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||    
T  28657134 tcattttaatccatttcagttaactttaaccccaaatgtcttaggtggaccaaccttgtaggtgatccaccgtagaccttattaa 28657050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 34 - 117
Target Start/End: Original strand, 28655567 - 28655650
Alignment:
Q  34 taggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 117  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||  ||| |||||||||||    
T  28655567 taggcttaattacataaatggtccctcaacttatttgttgttttcgatatggtcccttaattataaacttttccattttggtcc 28655650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 320
Target Start/End: Complemental strand, 11243649 - 11243549
Alignment:
Q  222 caaaaaagaaacggctagatcatttaaatatatcgtatattacaatgaaccatcaacacgtaactttttctccttttcttc--cttccaccctcatttct 319  Q
    |||||||| |||||||||||||||||  ||||| |||| ||| |||||| ||||||||| ||| |||||||| ||||||||  ||||||||||| |||||    
T  11243649 caaaaaaggaacggctagatcatttaggtatattgtatgttaaaatgaatcatcaacacataattttttctcattttcttcctcttccaccctcctttct 11243550  T
Q  320 t 320  Q
    |    
T  11243549 t 11243549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 11243872 - 11243806
Alignment:
Q  35 aggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaa 101  Q
    ||||| ||||| ||||||||||||||||||||||||||| ||| ||| ||||||||||| |||||||    
T  11243872 aggctaaattacataaatggtccctcaacttatttgttgttttagatttggtcccttaactctaaaa 11243806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 117
Target Start/End: Original strand, 20825434 - 20825515
Alignment:
Q  35 aggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 117  Q
    |||||||||| |||||||||||| | ||||||||||||| ||||||| |||||| ||||||||||||| ||||  ||||||||    
T  20825434 aggcttaattgtataaatggtcctt-aacttatttgttgttttcgatttggtcctttaattctaaaaaatttctatttggtcc 20825515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 11243766 - 11243705
Alignment:
Q  110 tttggtccatttcagttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggt 171  Q
    |||| ||||| | |||||||||||| ||||||| || |||||||||||||||||||||||||    
T  11243766 tttgatccatgttagttaactttaatcccaaatgtcttaggtggaccaaccttgtaggtggt 11243705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 9791775 - 9791706
Alignment:
Q  121 tcagttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 190  Q
    ||||||||| |||||||||||| |  ||||||||  ||  ||||||||||||||| ||||||||||||||    
T  9791775 tcagttaacattaaccccaaatgtattaggtggataaatattgtaggtggtccactgtagaccttattaa 9791706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 190
Target Start/End: Original strand, 2162727 - 2162793
Alignment:
Q  124 gttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 190  Q
    ||||| |||||||| ||||||   |||| ||||||| || ||||||||||||| |||||||||||||    
T  2162727 gttaagtttaaccctaaatatgtaaggttgaccaacattttaggtggtccaccatagaccttattaa 2162793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 20827644 - 20827578
Alignment:
Q  35 aggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaa 101  Q
    ||||||||||| ||||||||||  | ||||||||||||| ||| ||| ||| ||||||||| |||||    
T  20827644 aggcttaattacataaatggtcttttaacttatttgttgtttttgatttggacccttaattttaaaa 20827578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 186
Target Start/End: Original strand, 56000426 - 56000464
Alignment:
Q  148 aggtggaccaaccttgtaggtggtccaccgtagacctta 186  Q
    |||||||||||| || |||||||||||||||||||||||    
T  56000426 aggtggaccaacattataggtggtccaccgtagacctta 56000464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 1188986 - 1189023
Alignment:
Q  149 ggtggaccaaccttgtaggtggtccaccgtagacctta 186  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  1188986 ggtgaaccaacattgtaggtggtccaccgtagacctta 1189023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 10168783 - 10168714
Alignment:
Q  122 cagttaactttaacccc-aaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 190  Q
    ||||||||||||||||| |||| ||   ||||||||||| || ||| |||||||||||| ||||||||||    
T  10168783 cagttaactttaacccccaaatgtctatggtggaccaacattatagatggtccaccgtacaccttattaa 10168714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 27 - 117
Target Start/End: Complemental strand, 2628391 - 2628301
Alignment:
Q  27 taaaagataggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 117  Q
    ||||| |||||||||||| |||||||||||| | ||||||||||||| |||| || ||||||||||| |||||||| ||||  ||||||||    
T  2628391 taaaaaataggcttaattttataaatggtcctttaacttatttgttgttttcaatttggtcccttaactctaaaaaatttccgtttggtcc 2628301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 13875104 - 13875159
Alignment:
Q  38 cttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaa 93  Q
    |||||||||||||||||||||||||||||||||||| ||||||| || ||||||||    
T  13875104 cttaattatataaatggtccctcaacttatttgttgttttcgatttgatcccttaa 13875159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 327
Target Start/End: Complemental strand, 13876536 - 13876439
Alignment:
Q  232 acggctagatcatttaaatatatcgtatattacaatgaaccatcaacacgtaactttttctccttttcttc--cttccaccctcatttcttcatcatt 327  Q
    ||||||| ||||| ||| |||||| ||| |||||||||| ||||| ||| ||| |||||||||||||||||  |||| |||||| |||||||||||||    
T  13876536 acggctaaatcatataagtatatcatatgttacaatgaatcatcatcacataattttttctccttttcttcatcttctaccctcctttcttcatcatt 13876439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 43357003 - 43356945
Alignment:
Q  35 aggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaa 93  Q
    |||||||||||||||||| |||||||||||||||||||| ||| ||| |||||||||||    
T  43357003 aggcttaattatataaatcgtccctcaacttatttgttgtttttgatttggtcccttaa 43356945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 43356839 - 43356902
Alignment:
Q  38 cttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaa 101  Q
    |||||||| ||||||||||| ||||||||||||||| |||| || ||||||||||| |||||||    
T  43356839 cttaattacataaatggtccttcaacttatttgttgttttcaatttggtcccttaactctaaaa 43356902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 190
Target Start/End: Original strand, 21507180 - 21507249
Alignment:
Q  121 tcagttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 190  Q
    ||||||||||||||  |||||| |  |||||||||||||  ||||||||||||| |||||||||||||||    
T  21507180 tcagttaactttaattccaaatgtattaggtggaccaacaatgtaggtggtccatcgtagaccttattaa 21507249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 11661712 - 11661754
Alignment:
Q  148 aggtggaccaaccttgtaggtggtccaccgtagaccttattaa 190  Q
    |||||||||||||||||||||||| ||||||| | ||||||||    
T  11661712 aggtggaccaaccttgtaggtggttcaccgtaaaacttattaa 11661754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 10579717 - 10579652
Alignment:
Q  52 tggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 117  Q
    |||||||| ||||||||| ||| ||||||| ||||||||||| | | |||| |||| |||||||||    
T  10579717 tggtcccttaacttattttttggtttcgatttggtcccttaactattaaaagtttcgttttggtcc 10579652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 51299404 - 51299461
Alignment:
Q  130 tttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttat 187  Q
    |||||||| ||||||   |||| ||||||| |||||||||||||||| ||||||||||    
T  51299404 tttaaccctaaatatttaaggtagaccaacattgtaggtggtccaccatagaccttat 51299461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 8092719 - 8092779
Alignment:
Q  130 tttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 190  Q
    |||||||  |||||||  ||||| |||||| || ||||||||||||| |||||||||||||    
T  8092719 tttaaccttaaatatctaaggtgaaccaactttataggtggtccaccatagaccttattaa 8092779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 105 - 190
Target Start/End: Complemental strand, 7312300 - 7312215
Alignment:
Q  105 ttcattttggtccatttcagttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 190  Q
    |||| |||| ||||| |||||||||||||||||||||| |  ||| ||||||||| ||||||||||| ||||||||| ||||||||    
T  7312300 ttcaatttgatccatgtcagttaactttaaccccaaatgtattagatggaccaacattgtaggtggttcaccgtagatcttattaa 7312215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 24756986 - 24757066
Alignment:
Q  110 tttggtccatttcagttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 190  Q
    |||| ||||| |||||||||||||||| ||||  |  ||| |||| |||| |||||||||||| ||| |||||||||||||    
T  24756986 tttgatccatgtcagttaactttaaccacaaaagtattagatggagcaacattgtaggtggtctaccttagaccttattaa 24757066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 6889144 - 6889079
Alignment:
Q  52 tggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 117  Q
    |||||||| ||||||||| ||||||||| | ||||||||||| | | |||| |||| |||||||||    
T  6889144 tggtcccttaacttattttttgatttcgttttggtcccttaactattaaaagtttcgttttggtcc 6889079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 5645562 - 5645626
Alignment:
Q  52 tggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtc 116  Q
    |||||||| ||||||||| ||| ||||| | ||||||||||||| | |||| |||| ||||||||    
T  5645562 tggtcccttaacttattttttggtttcgttttggtcccttaattattaaaagtttcgttttggtc 5645626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 8286387 - 8286455
Alignment:
Q  52 tggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtccatt 120  Q
    |||||||| ||||||||| ||| ||||| | ||||||||||| | | |||| |||| ||||||||||||    
T  8286387 tggtcccttaacttattttttggtttcgttttggtcccttaactattaaaagtttcgttttggtccatt 8286455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 2717909 - 2717834
Alignment:
Q  26 ataaaagataggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaa 101  Q
    |||||||| ||||||||||| ||||||| ||||| ||||||||||||| |||| || ||||||||||| |||||||    
T  2717909 ataaaagaaaggcttaattacataaatgatcccttaacttatttgttgttttcaatttggtcccttaactctaaaa 2717834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 117
Target Start/End: Complemental strand, 28545074 - 28544991
Alignment:
Q  34 taggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 117  Q
    |||||||||||| |||||| |||||| || |||||||||| ||||||| |||||||| || ||||||  ||||| || ||||||    
T  28545074 taggcttaattacataaattgtcccttaatttatttgttgttttcgatttggtccctcaactctaaattttttctttctggtcc 28544991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 2277468 - 2277401
Alignment:
Q  123 agttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 190  Q
    |||||||||||||||||||| ||   ||||||||||| | |||| | ||||||| |||||||||||||    
T  2277468 agttaactttaaccccaaatgtctatggtggaccaacatggtagatagtccaccatagaccttattaa 2277401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 18971294 - 18971228
Alignment:
Q  124 gttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 190  Q
    ||||| |||||||| ||||||   |||||||||||| |||||| ||||| || ||||||||||||||    
T  18971294 gttaattttaacccaaaatatataaggtggaccaacattgtagatggtctactgtagaccttattaa 18971228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 190
Target Start/End: Original strand, 34147254 - 34147320
Alignment:
Q  124 gttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 190  Q
    ||||||||||||||||||| ||   ||||||||||| | |||| | ||||||| |||||||||||||    
T  34147254 gttaactttaaccccaaatgtctatggtggaccaacatggtagatagtccaccatagaccttattaa 34147320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 16038 - 16095
Alignment:
Q  36 ggcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaa 93  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||| || ||||||||    
T  16038 ggcttaattatataaatggtcccttaacttatttgttgttttcgatttgatcccttaa 16095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 326
Target Start/End: Original strand, 42836084 - 42836180
Alignment:
Q  232 acggctagatcatttaaatatatcgtatattacaatgaaccatcaacacgtaactttttctccttttcttc--cttccaccctcatttcttcatcat 326  Q
    ||||||||||||| ||  |||||||||| ||||| |||||||||||||| |||  |||| |||||||||||  |||| |||||| ||| ||||||||    
T  42836084 acggctagatcatataggtatatcgtatgttacagtgaaccatcaacacataatattttatccttttcttcatcttctaccctcctttgttcatcat 42836180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 302
Target Start/End: Complemental strand, 3138747 - 3138680
Alignment:
Q  235 gctagatcatttaaatatatcgtatattacaatgaaccatcaacacgtaactttttctccttttcttc 302  Q
    |||||||||| ||  |||||||||| ||||| |||||||||||||| ||| ||||| |||||||||||    
T  3138747 gctagatcatataggtatatcgtatgttacagtgaaccatcaacacataattttttttccttttcttc 3138680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 3138862 - 3138793
Alignment:
Q  121 tcagttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 190  Q
    ||||||||||||||||||||||||  ||||| |||||||    | ||||||||||||| |||||||||||    
T  3138862 tcagttaactttaaccccaaatatattaggtagaccaacaccattggtggtccaccgtcgaccttattaa 3138793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 42100105 - 42100039
Alignment:
Q  124 gttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 190  Q
    ||||||||||||  ||||| || | ||||||||||||||  | |||||||| |||||||||||||||    
T  42100105 gttaactttaacttcaaatgtctttggtggaccaaccttaaaagtggtccatcgtagaccttattaa 42100039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 190
Target Start/End: Original strand, 45395085 - 45395151
Alignment:
Q  124 gttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 190  Q
    |||||||||||| |||||||||   ||||||||||  |||||||||||||| | |||||| ||||||    
T  45395085 gttaactttaactccaaatatctatggtggaccaatattgtaggtggtccatcatagaccgtattaa 45395151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 21524699 - 21524634
Alignment:
Q  52 tggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 117  Q
    |||||||| ||||||||| ||| ||||| | ||||||||||| | | |||| ||||||||||||||    
T  21524699 tggtcccttaacttattttttggtttcgttttggtcccttaactattaaaagtttcattttggtcc 21524634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 42835976 - 42836012
Alignment:
Q  123 agttaactttaaccccaaatatcctaggtggaccaac 159  Q
    ||||||||||||||||||||||  |||||||||||||    
T  42835976 agttaactttaaccccaaatatattaggtggaccaac 42836012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 7354608 - 7354688
Alignment:
Q  110 tttggtccatttcagttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 190  Q
    ||||||||| |||| |||||||||||| ||||| ||  || ||||||||| || || |||||||| |||||||||||||||    
T  7354608 tttggtccacttcaattaactttaaccacaaatgtctaagatggaccaacattataagtggtccatcgtagaccttattaa 7354688  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 39383821 - 39383886
Alignment:
Q  52 tggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 117  Q
    |||||||| ||||||||| ||| ||||| | ||||||||||||| | |||| |||| |||||||||    
T  39383821 tggtcccttaacttattttttggtttcgttttggtcccttaattattaaaagtttcgttttggtcc 39383886  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 302
Target Start/End: Complemental strand, 43460683 - 43460642
Alignment:
Q  261 ttacaatgaaccatcaacacgtaactttttctccttttcttc 302  Q
    ||||| |||||||||||||| ||||||||| |||||||||||    
T  43460683 ttacattgaaccatcaacacttaactttttttccttttcttc 43460642  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 29861496 - 29861576
Alignment:
Q  37 gcttaattatataaatggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 117  Q
    ||||||||| |||| |||||||  ||||||||||||| ||||||| || |||||||  | ||||||  |||| ||||||||    
T  29861496 gcttaattacataactggtcccctaacttatttgttgttttcgatttgatcccttatctttaaaaaaattcaatttggtcc 29861576  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 12830933 - 12830877
Alignment:
Q  130 tttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagacctta 186  Q
    |||||||| ||||||| |||||| |||||| || ||||||||||||| |||||||||    
T  12830933 tttaaccctaaatatcttaggtgaaccaacattataggtggtccaccatagacctta 12830877  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 12862913 - 12862857
Alignment:
Q  130 tttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagacctta 186  Q
    |||||||| ||||||| |||||| |||||| || ||||||||||||| |||||||||    
T  12862913 tttaaccctaaatatcttaggtgaaccaacattataggtggtccaccatagacctta 12862857  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 190
Target Start/End: Original strand, 32757943 - 32758009
Alignment:
Q  124 gttaactttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagaccttattaa 190  Q
    ||||||||||||||||||| ||   ||||||||||| | |||| | ||||||| |||||||||||||    
T  32757943 gttaactttaaccccaaatgtctatggtggaccaacatggtagatagtccaccatagaccttattaa 32758009  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 1155980 - 1156045
Alignment:
Q  52 tggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 117  Q
    |||||||| ||||||||| ||| ||||| | ||||||||||| | | |||| ||||||||||||||    
T  1155980 tggtcccttaacttattttttggtttcgttttggtcccttaactattaaaagtttcattttggtcc 1156045  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 14858617 - 14858552
Alignment:
Q  52 tggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 117  Q
    |||||||| ||||||||| ||||||||| | ||||||||||||| | |||| |||  |||||||||    
T  14858617 tggtcccttaacttattttttgatttcgttttggtcccttaattattaaaagttttgttttggtcc 14858552  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 36442236 - 36442301
Alignment:
Q  52 tggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 117  Q
    |||||||| ||||||||| ||| ||||| | ||||||||||| | | |||| ||||||||||||||    
T  36442236 tggtcccttaacttattttttgctttcgttttggtcccttaactattaaaagtttcattttggtcc 36442301  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 42382215 - 42382150
Alignment:
Q  52 tggtccctcaacttatttgttgatttcgatatggtcccttaattctaaaaattttcattttggtcc 117  Q
    |||||||| ||||||||| ||| ||||||| ||||||||||| | | |||| |||| |||||||||    
T  42382215 tggtcccttaacttattttttggtttcgatttggtcccttaactattaaaagtttcgttttggtcc 42382150  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 15856654 - 15856710
Alignment:
Q  130 tttaaccccaaatatcctaggtggaccaaccttgtaggtggtccaccgtagacctta 186  Q
    |||||||| |||| ||  |||||||||||| || ||||||||||||| |||||||||    
T  15856654 tttaaccctaaatgtctaaggtggaccaacattataggtggtccaccatagacctta 15856710  T

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Target: scaffold0128 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 22123 - 22164
Alignment:
Q  149 ggtggaccaaccttgtaggtggtccaccgtagaccttattaa 190  Q
    ||||||||||| |||||||||||||||| |||||| ||||||    
T  22123 ggtggaccaacattgtaggtggtccaccatagaccctattaa 22164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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