View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2850_low_5 (Length: 384)
Name: NF2850_low_5
Description: NF2850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2850_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 10 - 375
Target Start/End: Complemental strand, 18730585 - 18730220
Alignment:
| Q |
10 |
aagaatatggttaggttcttacgactcagccgtgaaggcggcgcgtgcatttgatgcggctatgttttgcttacgtggcagtggtgctaagtttaatttt |
109 |
Q |
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| T |
18730585 |
aagaatatggttaggttcttacgactcagccgtaaaggcggcgcgtgcattagaagcggctatgttttgcttacgtggcagtggtgctaagtttaattta |
18730486 |
T |
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| Q |
110 |
cctaatgatcctccgtacattgccggaggaaggtccatgacacattctgagattaagaccgctgcagcttcttttgctaattcgggtcaacccgaaaaga |
209 |
Q |
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|||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
18730485 |
cctaatgatcctccagaaattgcaggaggaaggtccatgacacattctgagattaagaccgctgcagcttcttttgctaattcgggtcaactcgaaaaga |
18730386 |
T |
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| Q |
210 |
cttcgtttgaaacaccgtcatcattggaggggacggcaacaacattgttgtctatggagttgccgtctcctgctctatccgatgtgacggttcagacaga |
309 |
Q |
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| T |
18730385 |
cttcgtttgaaacaccgtcatcatcggaggggacgacaacaacattgttgtctatggagttgccgtctcctgctctatccgatgtgacggttcagacaga |
18730286 |
T |
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| Q |
310 |
ttgtgactccaaggaaaacgggttattttcggacatgtttttagaaactggatcgggttgctctat |
375 |
Q |
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| T |
18730285 |
ttgtgactccaaggaaaacgggttattttcggacatgtttttagaaactggatcgggttgctctat |
18730220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 10 - 375
Target Start/End: Complemental strand, 18733355 - 18732990
Alignment:
| Q |
10 |
aagaatatggttaggttcttacgactcagccgtgaaggcggcgcgtgcatttgatgcggctatgttttgcttacgtggcagtggtgctaagtttaatttt |
109 |
Q |
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| T |
18733355 |
aagaatatggttaggttcttacgactcagccgtaaaggcggcgcgtgcatttgatgcggctatgttttgcttacgtggcagtggtgctaagtttaatttt |
18733256 |
T |
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| Q |
110 |
cctaatgatcctccgtacattgccggaggaaggtccatgacacattctgagattaagaccgctgcagcttcttttgctaattcgggtcaacccgaaaaga |
209 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
18733255 |
cctaatgatcctccgtacattgccggaggaagatccatgacacatgctgagattaagaccgctgcagcttcttttgctaattcgggtcaacccgaaaata |
18733156 |
T |
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| Q |
210 |
cttcgtttgaaacaccgtcatcattggaggggacggcaacaacattgttgtctatggagttgccgtctcctgctctatccgatgtgacggttcagacaga |
309 |
Q |
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| T |
18733155 |
ctccgtttgaaacaccgtcatcatcggaggggactgcaacaacattgttgtctatggagttgttgtctcctgctctatccgatgtgacggttcagacaga |
18733056 |
T |
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| Q |
310 |
ttgtgactccaaggaaaacgggttattttcggacatgtttttagaaactggatcgggttgctctat |
375 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||||| || || |||| |||||| |
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| T |
18733055 |
ttgtaactccaaggaaaacgggttattttcggacatgttttcagaaaccgggtcaggttactctat |
18732990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 11 - 199
Target Start/End: Complemental strand, 18735923 - 18735735
Alignment:
| Q |
11 |
agaatatggttaggttcttacgactcagccgtgaaggcggcgcgtgcatttgatgcggctatgttttgcttacgtggcagtggtgctaagtttaattttc |
110 |
Q |
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||||||||||||||||| || ||||| | |||||||||||| |||||||| || || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18735923 |
agaatatggttaggttcctatgactccgacgtgaaggcggcacgtgcattcgacgcagctatgttttgcttacgtggcagtggtgctaagtttaattttc |
18735824 |
T |
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| Q |
111 |
ctaatgatcctccgtacattgccggaggaaggtccatgacacattctgagattaagaccgctgcagcttcttttgctaattcgggtcaa |
199 |
Q |
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| T |
18735823 |
ctaatgatcctccggagattgccggaggaaggtccatgacacattctgagattaagaccgcggcagcccgttttgccaattcgggtcaa |
18735735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 196
Target Start/End: Complemental strand, 18743382 - 18743197
Alignment:
| Q |
11 |
agaatatggttaggttcttacgactcagccgtgaaggcggcgcgtgcatttgatgcggctatgttttgcttacgtggcagtggtgctaagtttaattttc |
110 |
Q |
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|||||||||||||||||||| || || |||| ||||||||||||||| || || ||||| ||||||||||||||||||||||||||||||||||| || | |
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| T |
18743382 |
agaatatggttaggttcttatgattctgccgagaaggcggcgcgtgctttcgacgcggcgatgttttgcttacgtggcagtggtgctaagtttaacttcc |
18743283 |
T |
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| Q |
111 |
ctaatgatcctccgtacattgccggaggaaggtccatgacacattctgagattaagaccgctgcagcttcttttgctaattcgggt |
196 |
Q |
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| T |
18743282 |
ctaatgatccaccaaacattgctggaggaagaacaatgactccttctgagattcaagctgctgcagcccgttttgctaattcgggt |
18743197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 261
Target Start/End: Complemental strand, 18735622 - 18735577
Alignment:
| Q |
216 |
ttgaaacaccgtcatcattggaggggacggcaacaacattgttgtc |
261 |
Q |
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| T |
18735622 |
ttgaaacaccatctttattggaggggacgacaacaacattgttgtc |
18735577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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