View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2850_low_6 (Length: 347)
Name: NF2850_low_6
Description: NF2850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2850_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 337
Target Start/End: Complemental strand, 44109514 - 44109195
Alignment:
| Q |
18 |
gatagtgcgagagacttgacacttgcaagtccactcaatagcacaactgaataaggagaaacatgccataacatgttgatacagatccacattgatgttt |
117 |
Q |
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| T |
44109514 |
gatagtgcgagagacttgacacttgcaagtccactcaatagcacaactgaataaggagaaacatgccataacaggttgatacagatccacattgatgttt |
44109415 |
T |
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| Q |
118 |
tgcattctgtacagttattacaaaaatccaaatcactttcatccaactttgtgagacatatagctttgaagaggcaaattatttcttgagatgctgacag |
217 |
Q |
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| T |
44109414 |
tgcattctgtacagttattacaaaaattcaaatcactttcatccaactttgagagacatatagctttgaagaggcaaattatttcttgagatgcagacag |
44109315 |
T |
|
| Q |
218 |
ttattaccaacctccaactattacacttcaagactccaatcttgtatcgattctaagtgtagatagcacattctcctctttctgtcggaaaatggtttgg |
317 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44109314 |
ttattaccaacctccaactattacacttcacgactccaatcttgtatcgattctaagtgtagatagcacattctcctctttctgttggaaaatggtttgg |
44109215 |
T |
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| Q |
318 |
caaaacatttagtatctgtg |
337 |
Q |
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| T |
44109214 |
caaaacatttagtatctgtg |
44109195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 43760320 - 43760251
Alignment:
| Q |
121 |
attctgtacagttattacaaaaatccaaatcactttcatccaactttgtgagacatatagctttgaagag |
190 |
Q |
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| T |
43760320 |
attctgttcagttattacaaaaattcaaatcactttcatcaaactttgagaggcagatagctttgaagag |
43760251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 272 - 337
Target Start/End: Complemental strand, 44146781 - 44146716
Alignment:
| Q |
272 |
aagtgtagatagcacattctcctctttctgtcggaaaatggtttggcaaaacatttagtatctgtg |
337 |
Q |
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| T |
44146781 |
aagtgtagatagcacgttcttctctttctgtcgggaaatgctttggcaaaacatttagtacctgtg |
44146716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 40450839 - 40450897
Alignment:
| Q |
18 |
gatagtgcgagagacttgacacttgcaagtccactcaatagcacaactgaataaggaga |
76 |
Q |
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| T |
40450839 |
gatagtgtaagagacttgacacttgcaagtccactcagtagcacaaccgaataaggaga |
40450897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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