View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2850_low_8 (Length: 252)
Name: NF2850_low_8
Description: NF2850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2850_low_8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 52183585 - 52183334
Alignment:
| Q |
1 |
gcataactgtacgcagagggacacgcagacttgaacatctctgagtactgtgttggactgcaactctgtggactcgaatgttcaccggtgcaacaaaatt |
100 |
Q |
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| T |
52183585 |
gcataactgtacgcagagggacacgcagacttgaacatctctgagtactgtgttgaactgcaactctgtggactcgaatgttcaccggtacaacaaaatt |
52183486 |
T |
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| Q |
101 |
cctcggttttaaacgctgcacacgcactcttacaggccaccaccgaaccccctacctctgttacctgcaactccgctggacaatgacttttcaaatctgc |
200 |
Q |
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| T |
52183485 |
cctcggtattaaacgctgcacacgcactcttacaggccaccaccgaaccccctacctctgttacctgcaactccgctggacaatgactgttcaaatccgc |
52183386 |
T |
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| Q |
201 |
aacacaacctgcatactgacaatcacctgttcctctggttgcttgtatccct |
252 |
Q |
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| T |
52183385 |
aacacaacctgcatactgacaatcacctgttcctctggttgcttgtatccct |
52183334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 6679231 - 6679167
Alignment:
| Q |
85 |
ccggtgcaacaaaattcctcggttttaaacgctgcacacgcactcttacaggccaccaccgaacc |
149 |
Q |
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| T |
6679231 |
ccggtgcaacaaaattcctccatattgaacgccaaacacgcgctcttacaagccaccaccgaacc |
6679167 |
T |
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