View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2851_high_13 (Length: 362)

Name: NF2851_high_13
Description: NF2851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2851_high_13
NF2851_high_13
[»] chr5 (6 HSPs)
chr5 (18-345)||(1504335-1504660)
chr5 (146-350)||(1491566-1491770)
chr5 (146-350)||(1481676-1481880)
chr5 (146-333)||(1477582-1477769)
chr5 (146-293)||(1485469-1485618)
chr5 (154-332)||(1496794-1496972)
[»] chr7 (5 HSPs)
chr7 (146-329)||(5314502-5314685)
chr7 (146-344)||(5309670-5309868)
chr7 (146-329)||(5283860-5284043)
chr7 (146-329)||(5290084-5290267)
chr7 (146-329)||(5302048-5302231)
[»] chr1 (3 HSPs)
chr1 (138-346)||(44128148-44128356)
chr1 (138-346)||(44132353-44132561)
chr1 (138-346)||(44140775-44140983)
[»] chr2 (1 HSPs)
chr2 (146-317)||(24165439-24165610)
[»] chr3 (3 HSPs)
chr3 (147-260)||(37863716-37863829)
chr3 (147-203)||(37859726-37859782)
chr3 (147-227)||(39029611-39029691)


Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 1504660 - 1504335
Alignment:
Q  18 ccaaaaataaaccataagtaaatgaactgaggtaatatatcaagaatgtacttgtccatgtatatttatnnnnnnnnnngaacattgattttattaccta 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||    
T  1504660 ccaaaaataaaccataagtaaatgaactgaggtaatatatcaagaatgtacttgtccatgtatatttataaaaaaaa--gaacattgattttattaccta 1504563  T
Q  118 gaaatgtagtgataaaatatgaaaaaacacttacacatgcgttgaaatttctctttgagttcagttttgtgttcactgtttgtgattctaaagtagaaat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1504562 gaaatgtagtgataaaatatgaaaaaacacttacacatgcgttgaaatttctctttgagttcagttttgtgttcactgtttgtgattctaaagtagaaat 1504463  T
Q  218 caggatatgtgctttgttcaacacaatttgctggatttgcagtaccaatgaccaaaatggttgcaggaccttctgctttctgagccttgcgaatttcaga 317  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1504462 caggatatgtgctttgttcaacacaatttggtggatttgcagtgccaatggccaaaatggttgcaggaccttctgctctctgagccttgcgaatttcaga 1504363  T
Q  318 tacactcaccatcttggtatttttagta 345  Q
    ||||||||||||||||||||||||||||    
T  1504362 tacactcaccatcttggtatttttagta 1504335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 146 - 350
Target Start/End: Complemental strand, 1491770 - 1491566
Alignment:
Q  146 acttacacatgcgttgaaatttctctttgagttcagttttgtgttcactgtttgtgattctaaagtagaaatcaggatatgtgctttgttcaacacaatt 245  Q
    |||||||||||||||||||||| |||||||| |||||||||||||| || ||||||||| ||||||| ||||||||||||||||||||||||||||| ||    
T  1491770 acttacacatgcgttgaaatttttctttgagctcagttttgtgttcgctatttgtgattttaaagtaaaaatcaggatatgtgctttgttcaacacagtt 1491671  T
Q  246 tgctggatttgcagtaccaatgaccaaaatggttgcaggaccttctgctttctgagccttgcgaatttcagatacactcaccatcttggtatttttagta 345  Q
    ||||||||||||||| |||||| |||| ||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||| |||    
T  1491670 tgctggatttgcagtgccaatggccaatatggttgcaggaccttctgccctttgagccttgcgaatttcagatacactcaccatcttggtatttttggta 1491571  T
Q  346 gtttc 350  Q
    |||||    
T  1491570 gtttc 1491566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 146 - 350
Target Start/End: Complemental strand, 1481880 - 1481676
Alignment:
Q  146 acttacacatgcgttgaaatttctctttgagttcagttttgtgttcactgtttgtgattctaaagtagaaatcaggatatgtgctttgttcaacacaatt 245  Q
    |||||||||||||||||||||| |||||||||||   ||| || ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||    
T  1481880 acttacacatgcgttgaaatttttctttgagttcgactttatgctcactgtttgtgattttaaagtaaaaatcaggatatgtgctttgttcaacacagtt 1481781  T
Q  246 tgctggatttgcagtaccaatgaccaaaatggttgcaggaccttctgctttctgagccttgcgaatttcagatacactcaccatcttggtatttttagta 345  Q
    ||||||||||||||| |||||| |||| ||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||| |||    
T  1481780 tgctggatttgcagtgccaatggccaatatggttgcaggaccttctgccctttgagccttgcgaatttcagatacactcaccatcttggtatttttggta 1481681  T
Q  346 gtttc 350  Q
    |||||    
T  1481680 gtttc 1481676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 146 - 333
Target Start/End: Complemental strand, 1477769 - 1477582
Alignment:
Q  146 acttacacatgcgttgaaatttctctttgagttcagttttgtgttcactgtttgtgattctaaagtagaaatcaggatatgtgctttgttcaacacaatt 245  Q
    |||||||||||||||||||||| ||||| ||||||  |||||| ||||||||||||||| | ||||| ||||||||||||||||||||||||||||| ||    
T  1477769 acttacacatgcgttgaaatttttctttaagttcaactttgtgctcactgtttgtgattttgaagtaaaaatcaggatatgtgctttgttcaacacagtt 1477670  T
Q  246 tgctggatttgcagtaccaatgaccaaaatggttgcaggaccttctgctttctgagccttgcgaatttcagatacactcaccatcttg 333  Q
     |||||||||||||| |||||| |||  ||||| ||||| ||||||||  ||||||||||||||||||||||||||||||||||||||    
T  1477669 ggctggatttgcagtgccaatggccatgatggtggcagggccttctgccctctgagccttgcgaatttcagatacactcaccatcttg 1477582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 146 - 293
Target Start/End: Complemental strand, 1485618 - 1485469
Alignment:
Q  146 acttacacatgcgttgaaatttctctttgagttcagttttgtgttcactgtttgtgattctaaagta--gaaatcaggatatgtgctttgttcaacacaa 243  Q
    ||||||| ||||| |||||||||||| ||||||  || ||||| || || |||| |||||| |||||  |||||||||||||||||||||||||||||||    
T  1485618 acttacaaatgcgctgaaatttctctctgagttgcgtcttgtgctcgctatttgcgattctgaagtatagaaatcaggatatgtgctttgttcaacacaa 1485519  T
Q  244 tttgctggatttgcagtaccaatgaccaaaatggttgcaggaccttctgc 293  Q
    |||| |||||||||||| || ||| |||| ||| ||||||| ||||||||    
T  1485518 tttggtggatttgcagttcctatggccaagatgattgcagggccttctgc 1485469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 154 - 332
Target Start/End: Complemental strand, 1496972 - 1496794
Alignment:
Q  154 atgcgttgaaatttctctttgagttcagttttgtgttcactgtttgtgattctaaagtagaaatcaggatatgtgctttgttcaacacaatttgctggat 253  Q
    ||||| || ||||||| ||| | |||||| ||||| ||| ||||||||| ||| || |||| ||||||||||||||||||||||| |||||||| |||||    
T  1496972 atgcgctggaatttcttttttaattcagtcttgtgctcattgtttgtgactctgaaatagagatcaggatatgtgctttgttcaatacaatttgttggat 1496873  T
Q  254 ttgcagtaccaatgaccaaaatggttgcaggaccttctgctttctgagccttgcgaatttcagatacactcaccatctt 332  Q
    ||||||| |||||  | || || |||| ||| ||||||||  | |||||| | ||||||||||||||| | ||||||||    
T  1496872 ttgcagtgccaatagctaagatagttgtagggccttctgccctttgagcccttcgaatttcagatacagttaccatctt 1496794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 136; Significance: 7e-71; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 146 - 329
Target Start/End: Complemental strand, 5314685 - 5314502
Alignment:
Q  146 acttacacatgcgttgaaatttctctttgagttcagttttgtgttcactgtttgtgattctaaagtagaaatcaggatatgtgctttgttcaacacaatt 245  Q
    ||||||||||||| |||||||||||||||||||||  |||||||||||| ||||| ||| ||||||| ||||||||||||||||||||||||||||||||    
T  5314685 acttacacatgcgctgaaatttctctttgagttcaactttgtgttcactatttgtaattttaaagtaaaaatcaggatatgtgctttgttcaacacaatt 5314586  T
Q  246 tgctggatttgcagtaccaatgaccaaaatggttgcaggaccttctgctttctgagccttgcgaatttcagatacactcaccat 329  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||| ||||||||||| |||||||||||    
T  5314585 tgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaatttcagacacactcaccat 5314502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 146 - 344
Target Start/End: Complemental strand, 5309868 - 5309670
Alignment:
Q  146 acttacacatgcgttgaaatttctctttgagttcagttttgtgttcactgtttgtgattctaaagtagaaatcaggatatgtgctttgttcaacacaatt 245  Q
    ||||||||||||| ||||||||||| || |||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  5309868 acttacacatgcgctgaaatttctccttaagttcagttttgtgttcactatttgtgattttaaagtaaaaatcaggatatgtgctttgttcaacacaatt 5309769  T
Q  246 tgctggatttgcagtaccaatgaccaaaatggttgcaggaccttctgctttctgagccttgcgaatttcagatacactcaccatcttggtatttttagt 344  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||| | ||||| || ||||||||||| ||||||||||| ||| ||| ||||||    
T  5309768 tgctggatttgcagtaccaatggccaaaatagttgcaggaccttctgctctttgagcattacgaatttcagacacactcaccattttgatatctttagt 5309670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 146 - 329
Target Start/End: Complemental strand, 5284043 - 5283860
Alignment:
Q  146 acttacacatgcgttgaaatttctctttgagttcagttttgtgttcactgtttgtgattctaaagtagaaatcaggatatgtgctttgttcaacacaatt 245  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||    
T  5284043 acttacacatgcgctgaaatttctctttaagttcagttttgtgttcactgtttgtgattttaaagtaaaaatcaggatacgtgctttgttcaacacaatt 5283944  T
Q  246 tgctggatttgcagtaccaatgaccaaaatggttgcaggaccttctgctttctgagccttgcgaatttcagatacactcaccat 329  Q
    ||||||||||||||| |||||| |||| ||||||||||| ||||||||  | ||||| || ||||||||||| |||||||||||    
T  5283943 tgctggatttgcagtcccaatggccaagatggttgcagggccttctgccctttgagctttacgaatttcagacacactcaccat 5283860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 146 - 329
Target Start/End: Original strand, 5290084 - 5290267
Alignment:
Q  146 acttacacatgcgttgaaatttctctttgagttcagttttgtgttcactgtttgtgattctaaagtagaaatcaggatatgtgctttgttcaacacaatt 245  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||| ||||||| ||||||||||| ||||||||||||||||||||    
T  5290084 acttacacatgcgctgaaatttctctttgagttcagttttgtgttcactatttgtaattttaaagtaaaaatcaggataagtgctttgttcaacacaatt 5290183  T
Q  246 tgctggatttgcagtaccaatgaccaaaatggttgcaggaccttctgctttctgagccttgcgaatttcagatacactcaccat 329  Q
    ||||||||||||||| |||||| | || || |||||||||||||||||  | ||||| || ||||||||||| |||||||||||    
T  5290184 tgctggatttgcagtgccaatggctaagatagttgcaggaccttctgccctttgagctttacgaatttcagacacactcaccat 5290267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 146 - 329
Target Start/End: Complemental strand, 5302231 - 5302048
Alignment:
Q  146 acttacacatgcgttgaaatttctctttgagttcagttttgtgttcactgtttgtgattctaaagtagaaatcaggatatgtgctttgttcaacacaatt 245  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||| ||||||| ||||||||||| ||||||||||||||||||||    
T  5302231 acttacacatgcgctgaaatttctctttgagttcagttttgtgttcactatttgtaattttaaagtaaaaatcaggataagtgctttgttcaacacaatt 5302132  T
Q  246 tgctggatttgcagtaccaatgaccaaaatggttgcaggaccttctgctttctgagccttgcgaatttcagatacactcaccat 329  Q
    ||||||||||||||| |||||| | || || |||||||||||||||||  | ||||| || ||||||||||| |||||||||||    
T  5302131 tgctggatttgcagtgccaatggctaagatagttgcaggaccttctgccctttgagctttacgaatttcagacacactcaccat 5302048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 6e-62; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 138 - 346
Target Start/End: Complemental strand, 44128356 - 44128148
Alignment:
Q  138 gaaaaaacacttacacatgcgttgaaatttctctttgagttcagttttgtgttcactgtttgtgattctaaagtagaaatcaggatatgtgctttgttca 237  Q
    ||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| | ||||||||||||||||||||||||||||||    
T  44128356 gaaaaaatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttca 44128257  T
Q  238 acacaatttgctggatttgcagtaccaatgaccaaaatggttgcaggaccttctgctttctgagccttgcgaatttcagatacactcaccatcttggtat 337  Q
    |||||||| ||||| |||||||| |||||| | |||||||||||||| ||||||||  | ||||| |||||||||||||| ||||| ||||| ||| |||    
T  44128256 acacaattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagacacactaaccatattgatat 44128157  T
Q  338 ttttagtag 346  Q
     ||| ||||    
T  44128156 ctttggtag 44128148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 138 - 346
Target Start/End: Complemental strand, 44132561 - 44132353
Alignment:
Q  138 gaaaaaacacttacacatgcgttgaaatttctctttgagttcagttttgtgttcactgtttgtgattctaaagtagaaatcaggatatgtgctttgttca 237  Q
    ||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| | ||||||||||||||||||||||||||||||    
T  44132561 gaaaaaatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttca 44132462  T
Q  238 acacaatttgctggatttgcagtaccaatgaccaaaatggttgcaggaccttctgctttctgagccttgcgaatttcagatacactcaccatcttggtat 337  Q
    |||||||| ||||| |||||||| |||||| | |||||||||||||| ||||||||  | ||||| |||||||||||||| ||||| ||||| ||| |||    
T  44132461 acacaattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagacacactaaccatattgatat 44132362  T
Q  338 ttttagtag 346  Q
     ||| ||||    
T  44132361 ctttggtag 44132353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 138 - 346
Target Start/End: Complemental strand, 44140983 - 44140775
Alignment:
Q  138 gaaaaaacacttacacatgcgttgaaatttctctttgagttcagttttgtgttcactgtttgtgattctaaagtagaaatcaggatatgtgctttgttca 237  Q
    ||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| | ||||||||||||||||||||||||||||||    
T  44140983 gaaaaaatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttca 44140884  T
Q  238 acacaatttgctggatttgcagtaccaatgaccaaaatggttgcaggaccttctgctttctgagccttgcgaatttcagatacactcaccatcttggtat 337  Q
    |||||||| ||||| |||||||| |||||| | |||||||||||||| ||||||||  | ||||| |||||||||||||| ||||| ||||| ||| |||    
T  44140883 acacaattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagacacactaaccatattgatat 44140784  T
Q  338 ttttagtag 346  Q
     ||| ||||    
T  44140783 ctttggtag 44140775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 146 - 317
Target Start/End: Original strand, 24165439 - 24165610
Alignment:
Q  146 acttacacatgcgttgaaatttctctttgagttcagttttgtgttcactgtttgtgattctaaagtagaaatcaggatatgtgctttgttcaacacaatt 245  Q
    ||||||| |||||||||||||| ||||||||||   | ||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  24165439 acttacaaatgcgttgaaatttttctttgagtttgatcttgtgctcgctgtttgtgactctaaagtagaaatcaggatatgtgctttgttcaacacagtt 24165538  T
Q  246 tgctggatttgcagtaccaatgaccaaaatggttgcaggaccttctgctttctgagccttgcgaatttcaga 317  Q
    || |||||||||||| |||||| |||| || |||||||| ||||||||  | |||||||| |||||||||||    
T  24165539 tggtggatttgcagtgccaatggccaagatagttgcagggccttctgccctttgagccttacgaatttcaga 24165610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 260
Target Start/End: Original strand, 37863716 - 37863829
Alignment:
Q  147 cttacacatgcgttgaaatttctctttgagttcagttttgtgttcactgtttgtgattctaaagtagaaatcaggatatgtgctttgttcaacacaattt 246  Q
    |||||||||||| || ||||| ||| ||||||||||||||||||||||||||||||| |  ||||| || ||||||||||| || || |||||||| |||    
T  37863716 cttacacatgcgctggaatttttctctgagttcagttttgtgttcactgtttgtgatacggaagtaaaagtcaggatatgtactctgatcaacacagttt 37863815  T
Q  247 gctggatttgcagt 260  Q
       |||||||||||    
T  37863816 tgaggatttgcagt 37863829  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 37859726 - 37859782
Alignment:
Q  147 cttacacatgcgttgaaatttctctttgagttcagttttgtgttcactgtttgtgat 203  Q
    |||||||||||| |||||||| |||||||| ||||| || |||||||||||||||||    
T  37859726 cttacacatgcgctgaaatttttctttgagctcagtcttatgttcactgtttgtgat 37859782  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 227
Target Start/End: Complemental strand, 39029691 - 39029611
Alignment:
Q  147 cttacacatgcgttgaaatttctctttgagttcagttttgtgttcactgtttgtgattctaaagtagaaatcaggatatgt 227  Q
    |||||||||||| |||||||| ||||| || || || ||||| ||||| |||||||| |  |||||||| || ||||||||    
T  39029691 cttacacatgcgctgaaatttttctttcagctctgtcttgtgctcactatttgtgatgcggaagtagaagtctggatatgt 39029611  T

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