View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2851_high_14 (Length: 334)
Name: NF2851_high_14
Description: NF2851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2851_high_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 247 - 319
Target Start/End: Original strand, 8279636 - 8279708
Alignment:
| Q |
247 |
aaacatttattaactttgtaaattctttattgcattttttcaacagggtttacaaaaaataattaagatggat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8279636 |
aaacatttattaactttgtaaattctttattgtattttttcaacaggatttacaaaaaataattaagatggat |
8279708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 8270681 - 8270763
Alignment:
| Q |
19 |
tatgaagtaatttcttggaaaagttatcaacagttaataaaataagtgacttattggacaagaattcttttgcctataaatag |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||| |||| |||| ||||||||||||| |||||||||||||||| |
|
|
| T |
8270681 |
tatgaagtaatttcttggaaaagttatcaacaattgataaaagaagtcacttgttggacaagaattgttttgcctataaatag |
8270763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 8279452 - 8279497
Alignment:
| Q |
82 |
attcttttgcctataaatagccaacttttgtatctttaattgatat |
127 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8279452 |
attcttttgcctataaatagccaacttatgtatctttaattgatat |
8279497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University