View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2851_high_16 (Length: 328)
Name: NF2851_high_16
Description: NF2851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2851_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 11 - 316
Target Start/End: Original strand, 34359376 - 34359681
Alignment:
| Q |
11 |
atgaatgcaaactgcaaagtctaaatgccttgaataaattgttttcgtgagttccaaggcaagataggacaatatatgatgtgtagcagcatatgacacg |
110 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34359376 |
atgagtgcaaactgctaagtctaaatgccttgaataaattgttttcgtgagttccaaggcaagataggacaatatatgatgtgtagcagcatatgacacg |
34359475 |
T |
|
| Q |
111 |
agtaatagcttaatggttagatcaagatttaacaaaaatttcacacccgatcaaatgcacattaattttcgtattgggtagtttactgcaatggagtagc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34359476 |
agtaatagcttaatggttagatcaagatttaacaaaaatttcacacccgaccaaatgcacattaattttcgtattgggtagtttactgcaatggagtagc |
34359575 |
T |
|
| Q |
211 |
ttgactgctttaacattcaatagaatgaagttgtgttttccagtnnnnnnnnttgcaaatggcttagatggagatgtggtctctctcacttgtgtggttg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34359576 |
ttgactgctttaacattcaatagaatgaagttgtgttttccagtaaaaaaaattgcaaatggcttagatggagatgtggtctctctcacttgtgtggttg |
34359675 |
T |
|
| Q |
311 |
ttcttg |
316 |
Q |
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|||||| |
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| T |
34359676 |
ttcttg |
34359681 |
T |
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