View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2851_high_3 (Length: 667)

Name: NF2851_high_3
Description: NF2851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2851_high_3
NF2851_high_3
[»] chr1 (17 HSPs)
chr1 (301-644)||(40072841-40073170)
chr1 (185-343)||(40073622-40073780)
chr1 (303-381)||(6237962-6238040)
chr1 (314-388)||(22826750-22826824)
chr1 (303-388)||(6238331-6238416)
chr1 (329-385)||(40073535-40073591)
chr1 (304-388)||(19863167-19863251)
chr1 (297-388)||(40196829-40196920)
chr1 (303-388)||(21428051-21428137)
chr1 (303-371)||(47377880-47377948)
chr1 (351-388)||(7171762-7171799)
chr1 (303-343)||(36636846-36636886)
chr1 (350-388)||(5222719-5222757)
chr1 (303-388)||(38870942-38871028)
chr1 (303-388)||(38871148-38871234)
chr1 (331-388)||(47086299-47086356)
chr1 (460-496)||(17916190-17916226)
[»] chr2 (13 HSPs)
chr2 (11-151)||(2410780-2410920)
chr2 (303-391)||(10485216-10485304)
chr2 (298-388)||(36264142-36264233)
chr2 (303-388)||(39386695-39386781)
chr2 (303-385)||(4721799-4721880)
chr2 (311-388)||(17264976-17265054)
chr2 (303-388)||(29676319-29676405)
chr2 (303-388)||(32667208-32667294)
chr2 (328-388)||(17265222-17265282)
chr2 (351-391)||(32666999-32667039)
chr2 (305-388)||(3435481-3435565)
chr2 (303-371)||(29676192-29676260)
chr2 (310-381)||(32810876-32810948)
[»] chr8 (14 HSPs)
chr8 (297-388)||(43901005-43901096)
chr8 (303-389)||(25186548-25186634)
chr8 (303-388)||(15968058-15968143)
chr8 (305-388)||(25186797-25186880)
chr8 (303-388)||(3895156-3895241)
chr8 (303-388)||(16051248-16051333)
chr8 (298-375)||(41456311-41456388)
chr8 (315-388)||(3895404-3895477)
chr8 (315-388)||(8056243-8056316)
chr8 (312-385)||(15968189-15968262)
chr8 (350-388)||(8056528-8056566)
chr8 (303-385)||(15968422-15968504)
chr8 (350-388)||(33435908-33435946)
chr8 (303-386)||(40902386-40902470)
[»] chr7 (21 HSPs)
chr7 (303-388)||(33833975-33834060)
chr7 (298-388)||(29646089-29646179)
chr7 (327-388)||(33834180-33834241)
chr7 (303-388)||(31357667-31357754)
chr7 (303-388)||(7832956-7833042)
chr7 (350-388)||(22841077-22841115)
chr7 (303-388)||(16565123-16565209)
chr7 (303-388)||(16600453-16600539)
chr7 (322-388)||(29645840-29645906)
chr7 (296-388)||(5266384-5266477)
chr7 (303-388)||(4257993-4258079)
chr7 (350-388)||(10903318-10903356)
chr7 (350-388)||(10903525-10903563)
chr7 (303-388)||(16564919-16565005)
chr7 (303-388)||(16600657-16600743)
chr7 (303-388)||(33855716-33855802)
chr7 (323-388)||(23390615-23390680)
chr7 (303-388)||(30768443-30768528)
chr7 (303-387)||(34590554-34590639)
chr7 (351-388)||(38948455-38948492)
chr7 (355-388)||(49040591-49040624)
[»] chr3 (32 HSPs)
chr3 (303-388)||(26926932-26927017)
chr3 (303-388)||(40926479-40926564)
chr3 (303-388)||(19984645-19984730)
chr3 (303-388)||(32034116-32034201)
chr3 (303-388)||(39269070-39269155)
chr3 (303-388)||(39269525-39269610)
chr3 (315-388)||(40926806-40926879)
chr3 (304-388)||(39018785-39018869)
chr3 (312-371)||(20737248-20737307)
chr3 (303-388)||(44367604-44367689)
chr3 (303-388)||(35011682-35011768)
chr3 (303-388)||(35011889-35011975)
chr3 (299-375)||(33799157-33799234)
chr3 (303-388)||(37039977-37040062)
chr3 (320-388)||(32515918-32515986)
chr3 (303-388)||(42637737-42637826)
chr3 (312-388)||(44367803-44367879)
chr3 (303-389)||(11414387-11414474)
chr3 (303-389)||(19820521-19820608)
chr3 (329-388)||(29763716-29763775)
chr3 (317-388)||(40927055-40927126)
chr3 (350-388)||(26915141-26915179)
chr3 (350-388)||(40926728-40926766)
chr3 (350-388)||(50338423-50338461)
chr3 (311-375)||(19984415-19984479)
chr3 (296-388)||(39268864-39268956)
chr3 (303-346)||(26927158-26927201)
chr3 (303-388)||(4029637-4029723)
chr3 (303-388)||(50203850-50203936)
chr3 (460-497)||(54905141-54905178)
chr3 (303-386)||(4191115-4191199)
chr3 (303-386)||(50692553-50692637)
[»] chr4 (19 HSPs)
chr4 (298-388)||(14115480-14115570)
chr4 (303-388)||(3640231-3640316)
chr4 (303-388)||(41743561-41743646)
chr4 (303-388)||(45684383-45684468)
chr4 (298-388)||(8304944-8305034)
chr4 (303-388)||(14115739-14115824)
chr4 (303-388)||(9758329-9758414)
chr4 (303-388)||(56511322-56511408)
chr4 (298-388)||(3640481-3640573)
chr4 (297-388)||(14945168-14945260)
chr4 (303-388)||(42561859-42561945)
chr4 (303-388)||(56511529-56511615)
chr4 (303-391)||(5488389-5488478)
chr4 (303-384)||(45684168-45684249)
chr4 (303-388)||(47491840-47491925)
chr4 (329-388)||(14944919-14944978)
chr4 (350-388)||(7892693-7892731)
chr4 (303-388)||(53863930-53864016)
chr4 (350-391)||(23350821-23350862)
[»] chr5 (5 HSPs)
chr5 (297-388)||(4563679-4563770)
chr5 (303-388)||(18873188-18873273)
chr5 (353-391)||(17135541-17135579)
chr5 (303-386)||(28358028-28358112)
chr5 (305-388)||(38376756-38376840)
[»] chr6 (8 HSPs)
chr6 (303-388)||(26394576-26394661)
chr6 (340-388)||(21110003-21110051)
chr6 (350-388)||(19291959-19291997)
chr6 (303-388)||(25999048-25999134)
chr6 (303-388)||(26098367-26098453)
chr6 (303-388)||(26098779-26098865)
chr6 (451-497)||(26219213-26219259)
chr6 (303-383)||(12134476-12134557)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 301 - 644
Target Start/End: Complemental strand, 40073170 - 40072841
Alignment:
Q  301 aagaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttatttaacgacagtt 400  Q
    |||||||| || |||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  40073170 aagaaattggaagcctaactcatcctcaaaaaccggttcataaggtggagattgtctcctctatataaactcttaccaagagtcttatttaacgacaatt 40073071  T
Q  401 tatttaacgacagttaaatatggtttgacttttcaagtagcaattaactattgttggatacttttaagatcgattaaaccgacttaaagagtgattgtac 500  Q
                   |||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  40073070 ---------------aaatatggtttgactttttaagtagcaattaactatcgttggacacttttaagatcgattaaaccgacttaaagagtgattgtac 40072986  T
Q  501 cgttgaaaaagccaaacgtaagcatgaggctgaagaatgct-aatattgaagataatgggtagagacattgagaaatcaatagcgggatagtttacatgt 599  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  40072985 cgttgaaaaagccaaacgtaagcatgaggttgaagaatgctaaatattgaagataaggggtagagacattgagaaatcaatagcgggatagtttaaatgt 40072886  T
Q  600 aatatttttgatcaaatgcttttgattaattaaaagaatatcttt 644  Q
    ||||||||| ||||||||||| ||||| |||||||||||||||||    
T  40072885 aatattttttatcaaatgcttctgattgattaaaagaatatcttt 40072841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 185 - 343
Target Start/End: Complemental strand, 40073780 - 40073622
Alignment:
Q  185 attgatccactgttagtagcaaatgcatattcttactcatcaaatatgaatcaggatatgactcatctcacttttcatattactcttttcttcaactgtc 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||    
T  40073780 attgatccactgttagtagcaaatgcatattcttactcatcaaatatgaatcaggatatgactcatctcacttttcatattactcatttcttcaaccgtc 40073681  T
Q  285 cctgacccaacgattaaagaaatttgaggcctaacttatcctcaaaaaccggttcataa 343  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  40073680 cctgacccaacgattaaagaaatttgaggcctaactcatcctcaaaaactggttcataa 40073622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 303 - 381
Target Start/End: Original strand, 6237962 - 6238040
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaaga 381  Q
    |||||| ||||||||||| ||||| |||||||||||||||||||   |||||||||||||||||||||||||| |||||    
T  6237962 gaaattggaggcctaactcatccttaaaaaccggttcataaggtgaggattgtctcctctatataaactcttatcaaga 6238040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 314 - 388
Target Start/End: Original strand, 22826750 - 22826824
Alignment:
Q  314 cctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    ||||||| ||||| |||||||||||||||||||   |||||||||||||||||||||||||| ||||||||||||    
T  22826750 cctaactgatccttaaaaaccggttcataaggtgaggattgtctcctctatataaactcttatcaagagtcttat 22826824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 303 - 388
Target Start/End: Original strand, 6238331 - 6238416
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||| ||||| ||||| ||||| |||||||||||||||||||   ||||| |||||||||||||||||||| || |||||||||    
T  6238331 gaaattggaggcataactcatccttaaaaaccggttcataaggtgaggattgcctcctctatataaactcttatcaggagtcttat 6238416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 329 - 385
Target Start/End: Complemental strand, 40073591 - 40073535
Alignment:
Q  329 aaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtct 385  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||    
T  40073591 aaaaccggttcataaggtggggattgtctcctctatataaactcttactaagagtct 40073535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 304 - 388
Target Start/End: Complemental strand, 19863251 - 19863167
Alignment:
Q  304 aaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    ||||| ||||||||||| ||| | ||||||| |||||||||||   |||||  ||||||||||||||||||| ||||||||||||    
T  19863251 aaattggaggcctaactcatcgttaaaaaccagttcataaggtgaggattgcttcctctatataaactcttatcaagagtcttat 19863167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 297 - 388
Target Start/End: Original strand, 40196829 - 40196920
Alignment:
Q  297 attaaagaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    ||||| |||||| | ||||||||| ||||| ||||||| |||  ||| ||   |||||||||||||||||||||||||| ||||||||||||    
T  40196829 attaatgaaattgggggcctaactcatccttaaaaaccagtttctaaagtgaggattgtctcctctatataaactcttatcaagagtcttat 40196920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 303 - 388
Target Start/End: Original strand, 21428051 - 21428137
Alignment:
Q  303 gaaatttgaggcctaacttatcctca-aaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    ||||||||||| |||||| ||||||| ||||||||||  ||||||   ||||||| ||| |||||||||||||| ||||||||||||    
T  21428051 gaaatttgagggctaactcatcctcacaaaaccggtttgtaaggtaaggattgtcacctttatataaactcttatcaagagtcttat 21428137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 303 - 371
Target Start/End: Complemental strand, 47377948 - 47377880
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaact 371  Q
    |||||| |||| |||| | ||||| |||||||||||||||||||   ||||||||||||||||||||||    
T  47377948 gaaattggaggtctaattcatccttaaaaaccggttcataaggtgaggattgtctcctctatataaact 47377880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 351 - 388
Target Start/End: Complemental strand, 7171799 - 7171762
Alignment:
Q  351 attgtctcctctatataaactcttaccaagagtcttat 388  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  7171799 attgtctcctctatataaacttttaccaagagtcttat 7171762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 36636886 - 36636846
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaaccggttcataa 343  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  36636886 gaaattggaggcctaactcatcctcaaaaaccggttcataa 36636846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 5222757 - 5222719
Alignment:
Q  350 gattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  5222757 gattgtctcctctacataaactcttatcaagagtcttat 5222719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 388
Target Start/End: Original strand, 38870942 - 38871028
Alignment:
Q  303 gaaatttgaggcctaacttatcctca-aaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||||||||||||||| ||||| | ||||||||||| ||||||   || || |||| || |||||||| ||| ||||||||||||    
T  38870942 gaaatttgaggcctaactcatccttacaaaaccggttcttaaggtgaggagtgcctccactttataaacttttatcaagagtcttat 38871028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 388
Target Start/End: Original strand, 38871148 - 38871234
Alignment:
Q  303 gaaatttgaggcctaacttatcctca-aaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||||||||||||||  ||||| | ||||||||||| ||||||   || || ||||||| |||||||| ||| ||||||||||||    
T  38871148 gaaatttgaggcctaacgcatccttacaaaaccggttcttaaggtgaggagtgcctcctctttataaacttttatcaagagtcttat 38871234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 388
Target Start/End: Original strand, 47086299 - 47086356
Alignment:
Q  331 aaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    ||||||||||||||||   || |||||| | |||||||||||||| ||||||||||||    
T  47086299 aaccggttcataaggtgaggagtgtctcatgtatataaactcttatcaagagtcttat 47086356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 460 - 496
Target Start/End: Original strand, 17916190 - 17916226
Alignment:
Q  460 acttttaagatcgattaaaccgacttaaagagtgatt 496  Q
    |||||||||||||||| |||||||||||| |||||||    
T  17916190 acttttaagatcgattgaaccgacttaaaaagtgatt 17916226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 141; Significance: 1e-73; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 11 - 151
Target Start/End: Original strand, 2410780 - 2410920
Alignment:
Q  11 catcatcaggacggcgtttatcaggtttggtgaggtcgacaaacttaggtgcttcgatcttctcgtagaaatcgtcgtcaatttctatttcctcttcttc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2410780 catcatcaggacggcgtttatcaggtttggtgaggtcgacaaacttaggtgcttcgatcttctcgtagaaatcgtcgtcaatttctatttcctcttcttc 2410879  T
Q  111 aattataggcaagaatcgattttctgacattattttgttaa 151  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2410880 aattataggcaagaatcgattttctgacattattttgttaa 2410920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 303 - 391
Target Start/End: Complemental strand, 10485304 - 10485216
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttattta 391  Q
    |||||| ||||||||||| ||||| |||||||||||| ||||||   |||||||||||||||||||||||| | |||||||||||||||    
T  10485304 gaaattggaggcctaactcatccttaaaaaccggttcgtaaggtgaggattgtctcctctatataaactctcatcaagagtcttattta 10485216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 298 - 388
Target Start/End: Original strand, 36264142 - 36264233
Alignment:
Q  298 ttaaagaaatttgaggcctaacttatcctcaaaaaccggttcataaggttg-tgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||| |||||| ||||||||||| ||||| ||||||||||||||| |||||  ||||||| ||||||||||||| |||| ||||||||||||    
T  36264142 ttaatgaaattagaggcctaactcatccttaaaaaccggttcatagggttgaggattgtcacctctatataaacacttatcaagagtcttat 36264233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 39386781 - 39386695
Alignment:
Q  303 gaaatttgaggcctaacttatcctca-aaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||| ||||||||||| ||||| | |||||| |||||||||||   ||||| |||||||||||||||||||| ||||||||||||    
T  39386781 gaaattggaggcctaactcatccttacaaaaccagttcataaggtgaggattgcctcctctatataaactcttatcaagagtcttat 39386695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 303 - 385
Target Start/End: Original strand, 4721799 - 4721880
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtct 385  Q
    |||||||||||||||||| ||||| ||||   |||||||||| |  |||||| |||||||||||||||||||| |||||||||    
T  4721799 gaaatttgaggcctaactcatccttaaaatt-ggttcataagttgatgattgcctcctctatataaactcttatcaagagtct 4721880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 388
Target Start/End: Original strand, 17264976 - 17265054
Alignment:
Q  311 aggcctaacttatcctcaaaaacc-ggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||||||| ||||| ||||| | ||||||| ||||   ||||| |||||||||||||||| ||||||||||||||||    
T  17264976 aggcctaactcatccttaaaaaactggttcatcaggtgaggattgcctcctctatataaacttttaccaagagtcttat 17265054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 29676405 - 29676319
Alignment:
Q  303 gaaatttgaggcctaacttatcctca-aaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||| |||| |||||||| ||| | ||||||||||| ||||||   ||||| ||||| |||||||||||||| ||||||||||||    
T  29676405 gaaattggaggtctaacttaaccttacaaaaccggttcttaaggtgaggattgactcctatatataaactcttatcaagagtcttat 29676319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 32667294 - 32667208
Alignment:
Q  303 gaaatttgaggcctaacttatcctca-aaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||||| ||||||||| ||||| | |||||||| |  ||||||   ||||| |||||||||||||||||||| ||||||||||||    
T  32667294 gaaatttggggcctaactcatccttacaaaaccggcttgtaaggtaaggattgcctcctctatataaactcttatcaagagtcttat 32667208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 328 - 388
Target Start/End: Complemental strand, 17265282 - 17265222
Alignment:
Q  328 aaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    ||||| |||||||| ||||   |||||  ||||||||||||||||||||||||||||||||    
T  17265282 aaaaatcggttcatcaggtgaggattgcatcctctatataaactcttaccaagagtcttat 17265222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 32667039 - 32666999
Alignment:
Q  351 attgtctcctctatataaactcttaccaagagtcttattta 391  Q
    |||| |||||||||||||||||||| |||||||||||||||    
T  32667039 attgcctcctctatataaactcttatcaagagtcttattta 32666999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 305 - 388
Target Start/End: Original strand, 3435481 - 3435565
Alignment:
Q  305 aatttgaggcctaacttatcctca-aaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||| ||||||||| ||||| | ||||||||||  ||||||   ||||| ||||||| |||||||||||  ||||||||||||    
T  3435481 aatttggggcctaactcatccttacaaaaccggtttgtaaggtgaggattgcctcctctgtataaactcttctcaagagtcttat 3435565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 371
Target Start/End: Complemental strand, 29676260 - 29676192
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaact 371  Q
    |||||| |||| | |||||||||| ||||| | ||| |||||||   ||||||||||||||||||||||    
T  29676260 gaaattggaggtccaacttatccttaaaaatccgtttataaggtgaggattgtctcctctatataaact 29676192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 310 - 381
Target Start/End: Original strand, 32810876 - 32810948
Alignment:
Q  310 gaggcctaacttatcctca-aaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaaga 381  Q
    ||||||||||| |||| || |||||||| |  ||||||  |||||||||||||| |||||||||||| |||||    
T  32810876 gaggcctaactcatccccacaaaaccggcttgtaaggtgatgattgtctcctctttataaactcttatcaaga 32810948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 297 - 388
Target Start/End: Original strand, 43901005 - 43901096
Alignment:
Q  297 attaaagaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    ||||| |||||| ||||||||||| ||||| |||||||||||||||||||   |||||||||||||||||||||||||| ||||||||||||    
T  43901005 attaatgaaattggaggcctaactcatccttaaaaaccggttcataaggtgaggattgtctcctctatataaactcttatcaagagtcttat 43901096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 303 - 389
Target Start/End: Complemental strand, 25186634 - 25186548
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttatt 389  Q
    |||||| ||||||||||| ||||| |||||||||||||||||||   |||||||||||||||||||||| |||| ||||||||||||    
T  25186634 gaaattggaggcctaactcatccttaaaaaccggttcataaggtgaggattgtctcctctatataaacttttacaaagagtcttatt 25186548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 303 - 388
Target Start/End: Original strand, 15968058 - 15968143
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||| | ||||||||| ||||| |||||||||||||||||||   ||||||||||| |||||||||||||| ||||||||||||    
T  15968058 gaaattggcggcctaactcatccttaaaaaccggttcataaggtgaggattgtctcctttatataaactcttatcaagagtcttat 15968143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 305 - 388
Target Start/End: Complemental strand, 25186880 - 25186797
Alignment:
Q  305 aatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||| ||||||||||| | ||| ||||||||||||||||| |  ||||||||||||||||||||||| ||| ||||||||||||    
T  25186880 aattggaggcctaactcaaccttaaaaaccggttcataagatgatgattgtctcctctatataaacttttatcaagagtcttat 25186797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 3895241 - 3895156
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||| ||||||||||| |||||  |||||| |||||||||||   ||||| |||||||||||||||||||| ||||||||||||    
T  3895241 gaaattggaggcctaactcatccttgaaaaccagttcataaggtgaggattgcctcctctatataaactcttatcaagagtcttat 3895156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 303 - 388
Target Start/End: Original strand, 16051248 - 16051333
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||| ||||||||||| ||||| |||||||  ||||||||||   || ||||||||||||||||||||||| ||||||||||||    
T  16051248 gaaattggaggcctaactcatccttaaaaaccaattcataaggtgaggagtgtctcctctatataaactcttatcaagagtcttat 16051333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 298 - 375
Target Start/End: Original strand, 41456311 - 41456388
Alignment:
Q  298 ttaaagaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactctta 375  Q
    |||| |||||| ||||||||||| ||||| |||||||||||||| ||||   ||||||||||||||||||||||||||    
T  41456311 ttaatgaaattggaggcctaactcatccttaaaaaccggttcatcaggtgaggattgtctcctctatataaactctta 41456388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 315 - 388
Target Start/End: Complemental strand, 3895477 - 3895404
Alignment:
Q  315 ctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||| ||||| ||||| |||||||||||||   ||||| || ||||||||||| ||||| ||||||||||||    
T  3895477 ctaactcatccttaaaaatcggttcataaggtgaggattgccttctctatataaattcttatcaagagtcttat 3895404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 8056243 - 8056316
Alignment:
Q  315 ctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||| ||||| || | ||||||||||| ||   ||||| |||||||||||||||||||| ||||||||||||    
T  8056243 ctaactcatccttaagagccggttcataatgtgaggattgcctcctctatataaactcttatcaagagtcttat 8056316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 312 - 385
Target Start/End: Original strand, 15968189 - 15968262
Alignment:
Q  312 ggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtct 385  Q
    ||||||||| | ||| |||||||||||||||||||   | ||| |||||||||||||||||||| ||| |||||    
T  15968189 ggcctaactcaaccttaaaaaccggttcataaggtgagggttgcctcctctatataaactcttatcaaaagtct 15968262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 8056528 - 8056566
Alignment:
Q  350 gattgtctcctctatataaactcttaccaagagtcttat 388  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  8056528 gattgtctcctctatataaacacttatcaagagtcttat 8056566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 385
Target Start/End: Original strand, 15968422 - 15968504
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtct 385  Q
    |||||| | ||||||||| | ||| ||||| ||||| |||||||   | |||||||||||| ||||||||||| |||||||||    
T  15968422 gaaattgggggcctaactcaaccttaaaaatcggtttataaggtgagggttgtctcctctaaataaactcttatcaagagtct 15968504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 33435946 - 33435908
Alignment:
Q  350 gattgtctcctctatataaactcttaccaagagtcttat 388  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  33435946 gattgtctcctttatataaactcttatcaagagtcttat 33435908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 386
Target Start/End: Original strand, 40902386 - 40902470
Alignment:
Q  303 gaaatttgaggcctaacttatcctca-aaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtctt 386  Q
    |||||||| ||||||||||||||| | |||||||| |  ||||||   ||||| ||||||| |||||||||||  ||||||||||    
T  40902386 gaaatttggggcctaacttatccttacaaaaccggcttgtaaggtgaggattgcctcctctttataaactcttctcaagagtctt 40902470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 33834060 - 33833975
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||| ||||||||||| ||||| |||||||||||||||||||   |||||||||||||||||||||||||| ||||||||||||    
T  33834060 gaaattggaggcctaactcatccttaaaaaccggttcataaggtgaggattgtctcctctatataaactcttatcaagagtcttat 33833975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 298 - 388
Target Start/End: Complemental strand, 29646179 - 29646089
Alignment:
Q  298 ttaaagaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||| |||||| | ||||||||| ||||| |||||||||||||||||||   ||||| ||||||||||||||||| || ||||||||||||    
T  29646179 ttaatgaaattgggggcctaactcatccttaaaaaccggttcataaggtgaggattgcctcctctatataaactcctatcaagagtcttat 29646089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 327 - 388
Target Start/End: Complemental strand, 33834241 - 33834180
Alignment:
Q  327 caaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||| ||||||||||||    
T  33834241 caaaaaccggttcataaggtgaggattgtctcctctatataaactcttatcaagagtcttat 33834180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 303 - 388
Target Start/End: Original strand, 31357667 - 31357754
Alignment:
Q  303 gaaatttgaggcctaacttatcct--caaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||||||||||||||| |||||  ||||| | | ||||||||||   |||||||||||||||||||||||||| ||||||||||||    
T  31357667 gaaatttgaggcctaactcatccttacaaaatcggcttcataaggtgaggattgtctcctctatataaactcttatcaagagtcttat 31357754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 303 - 388
Target Start/End: Original strand, 7832956 - 7833042
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaa-accggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||| | ||||||||| ||||| |||| |||||||||||||||   ||||| ||||||||||||||||| || ||||||||||||    
T  7832956 gaaattgggggcctaactcatccttaaaaaaccggttcataaggtgaggattgcctcctctatataaactcctatcaagagtcttat 7833042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 22841115 - 22841077
Alignment:
Q  350 gattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||||||||||||||||||||||||||||||||||||    
T  22841115 gattgtctcctctatataaactcttaccaagagtcttat 22841077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 16565209 - 16565123
Alignment:
Q  303 gaaatttgaggcctaacttatcc-tcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||||||||||||||| |||| | ||||| |||||||||||||   || || ||||| | |||||||||||| ||||||||||||    
T  16565209 gaaatttgaggcctaactcatccgtaaaaaatcggttcataaggtgaggagtgcctcctatttataaactcttatcaagagtcttat 16565123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 388
Target Start/End: Original strand, 16600453 - 16600539
Alignment:
Q  303 gaaatttgaggcctaacttatcc-tcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||||||||||||||| |||| | ||||| |||||||||||||   || || ||||| | |||||||||||| ||||||||||||    
T  16600453 gaaatttgaggcctaactcatccgtaaaaaatcggttcataaggtgaggagtgcctcctatttataaactcttatcaagagtcttat 16600539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 388
Target Start/End: Complemental strand, 29645906 - 29645840
Alignment:
Q  322 atcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    ||||| |||||||||||||||||||   ||||| ||||| ||||||||||| || ||||||||||||    
T  29645906 atccttaaaaaccggttcataaggtgaggattgcctcctttatataaactcatatcaagagtcttat 29645840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 296 - 388
Target Start/End: Complemental strand, 5266477 - 5266384
Alignment:
Q  296 gattaaagaaatttgaggcctaacttatcctca-aaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||| |||||| |||| |||||| ||||| | |||||||||||||||| |   |||||  |||||||||||| |||||| ||||||||||||    
T  5266477 gattaatgaaattggaggtctaactcatccttacaaaaccggttcataagttgaggattggatcctctatataatctcttatcaagagtcttat 5266384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 388
Target Start/End: Original strand, 4257993 - 4258079
Alignment:
Q  303 gaaatttgaggcctaacttatcc-tcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||||||||||||||| |||| | |||||| ||||||||||||   || || ||||| |  ||||||||||| ||||||||||||    
T  4257993 gaaatttgaggcctaactcatccttaaaaaactggttcataaggtgaggagtgcctcctattgataaactcttatcaagagtcttat 4258079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 10903318 - 10903356
Alignment:
Q  350 gattgtctcctctatataaactcttaccaagagtcttat 388  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  10903318 gattgcctcctctatataaactcttatcaagagtcttat 10903356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 10903525 - 10903563
Alignment:
Q  350 gattgtctcctctatataaactcttaccaagagtcttat 388  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  10903525 gattgcctcctctatataaactcttatcaagagtcttat 10903563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 16565005 - 16564919
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaa-ccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    ||||||| |||||||||| ||||| ||||| ||||||||||||||   || || ||||| | ||||||||||||  |||||||||||    
T  16565005 gaaatttaaggcctaactcatccttaaaaaaccggttcataaggtgaggagtgcctcctatttataaactcttattaagagtcttat 16564919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 388
Target Start/End: Original strand, 16600657 - 16600743
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaa-accggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    ||||||| |||||||||| ||||| |||| |||||||||||||||   || || ||||| | ||||||||||||  |||||||||||    
T  16600657 gaaatttaaggcctaactcatccttaaaaaaccggttcataaggtgaggagtgcctcctatttataaactcttattaagagtcttat 16600743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 33855802 - 33855716
Alignment:
Q  303 gaaatttgaggcctaacttatcctca-aaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||||| ||||||||| || || | ||||||||||||||||||   || |||||||||| |||||||| ||| || |||||||||    
T  33855802 gaaatttggggcctaactcattcttacaaaaccggttcataaggtgaggagtgtctcctctttataaactattatcatgagtcttat 33855716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 388
Target Start/End: Complemental strand, 23390680 - 23390615
Alignment:
Q  323 tcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||| |||||||| ||||| |||| | ||||   ||||||||||||||||||| ||||||||||||    
T  23390680 tccttaaaaaccgattcatcaggtggagattacttcctctatataaactcttatcaagagtcttat 23390615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 30768528 - 30768443
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||| || |||||||| ||||| |||||||  ||||| ||||   ||| |||||||||||||||| | ||| ||||||||||||    
T  30768528 gaaattggatgcctaactcatccttaaaaaccaattcattaggtgaggatcgtctcctctatataaattattatcaagagtcttat 30768443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 387
Target Start/End: Complemental strand, 34590639 - 34590554
Alignment:
Q  303 gaaatttgaggcctaacttatcctca-aaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtctta 387  Q
    |||||||| ||| ||||| ||||| | ||||||||||||||||||   || || ||||||| ||||||||||||  ||||||||||    
T  34590639 gaaatttggggcttaactcatccttacaaaaccggttcataaggtgaggagtgcctcctctttataaactcttatgaagagtctta 34590554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 388
Target Start/End: Original strand, 38948455 - 38948492
Alignment:
Q  351 attgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||||||||||||||||||||||  |||||||||||    
T  38948455 attgtctcctctatataaactcttataaagagtcttat 38948492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 388
Target Start/End: Complemental strand, 49040624 - 49040591
Alignment:
Q  355 tctcctctatataaactcttaccaagagtcttat 388  Q
    ||||||||||||||||||||| ||||||||||||    
T  49040624 tctcctctatataaactcttatcaagagtcttat 49040591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 5e-24; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 26927017 - 26926932
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||| ||||||||||| ||||| |||||||||||||||||||   |||||||||||||||||||||||||| ||||||||||||    
T  26927017 gaaattggaggcctaactcatccttaaaaaccggttcataaggtgaggattgtctcctctatataaactcttatcaagagtcttat 26926932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 40926564 - 40926479
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||| ||||||||||| ||||| |||||||||||| |||||    |||||||||||||||||||||||||| ||||||||||||    
T  40926564 gaaattggaggcctaactcatccttaaaaaccggttcttaaggagaggattgtctcctctatataaactcttatcaagagtcttat 40926479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 303 - 388
Target Start/End: Original strand, 19984645 - 19984730
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||| |||| |||||| ||||| |||||||||||||||||||   ||||||||  |||||||||||||||||||| ||||||||    
T  19984645 gaaattggaggtctaactcatccttaaaaaccggttcataaggtgaggattgtctagtctatataaactcttaccaaaagtcttat 19984730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 32034201 - 32034116
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||| |||| |||||| ||||| |||||||||||||||||||   ||||||||||| | |||||||||||| ||||||||||||    
T  32034201 gaaattggaggtctaactcatccttaaaaaccggttcataaggtgaggattgtctcctttgtataaactcttatcaagagtcttat 32034116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 39269155 - 39269070
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||| |||| |||||| ||||| |||||| ||||||||||||   ||||| |||||||||||||||||||| ||||||||||||    
T  39269155 gaaattggaggtctaactcatccttaaaaactggttcataaggtgaggattgcctcctctatataaactcttatcaagagtcttat 39269070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 39269610 - 39269525
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||| ||||||||||| ||| | ||||||| ||||||||| |   |||||||||||||||||||||||||| ||||||||||||    
T  39269610 gaaattggaggcctaactcatctttaaaaaccagttcataagttgaggattgtctcctctatataaactcttatcaagagtcttat 39269525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 315 - 388
Target Start/End: Complemental strand, 40926879 - 40926806
Alignment:
Q  315 ctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||| ||||| ||||||||||||||||||    |||||||||||||||||||||||||| ||||||||||||    
T  40926879 ctaactcatccttaaaaaccggttcataaggagaggattgtctcctctatataaactcttatcaagagtcttat 40926806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 304 - 388
Target Start/End: Original strand, 39018785 - 39018869
Alignment:
Q  304 aaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    ||||| ||||||||||| ||||| |||||| |||||||||| |   ||||||||||||||||||||||| || ||||||||||||    
T  39018785 aaattggaggcctaactcatccttaaaaactggttcataagttgaggattgtctcctctatataaactcctatcaagagtcttat 39018869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 312 - 371
Target Start/End: Complemental strand, 20737307 - 20737248
Alignment:
Q  312 ggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaact 371  Q
    ||||||||| ||||| ||||||||||||||||||||| |||||| |||||||||||||||    
T  20737307 ggcctaactcatccttaaaaaccggttcataaggttgggattgtttcctctatataaact 20737248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 44367689 - 44367604
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||||||||||||||| |||||  |||| | ||||||||| |   |||||||||||||||||||||||||  ||||||||||||    
T  44367689 gaaatttgaggcctaactcatccttgaaaatcagttcataagttgaggattgtctcctctatataaactcttctcaagagtcttat 44367604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 35011768 - 35011682
Alignment:
Q  303 gaaatttgaggcctaacttatcctca-aaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||||| ||||||||| ||||| | ||||||||||||||||||   || |||||||||| ||||| |||||| ||||||||||||    
T  35011768 gaaatttggggcctaactcatccttacaaaaccggttcataaggtgaggagtgtctcctctttataatctcttatcaagagtcttat 35011682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 35011975 - 35011889
Alignment:
Q  303 gaaatttgaggcctaacttatcctca-aaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||||| ||||||||| ||||| | ||||||||||||||||||   || || ||||||| |||||||||||| ||||||||||||    
T  35011975 gaaatttggggcctaactcatccttacaaaaccggttcataaggtgaggagtgcctcctctttataaactcttatcaagagtcttat 35011889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 299 - 375
Target Start/End: Complemental strand, 33799234 - 33799157
Alignment:
Q  299 taaagaaatttgaggcctaacttatcctca-aaaaccggttcataaggttgtgattgtctcctctatataaactctta 375  Q
    |||||||||| |||| |||||| ||||| | |||| |||||||| |||||  ||||||||||||||||||||||||||    
T  33799234 taaagaaattggaggtctaactcatccttacaaaatcggttcatcaggttaggattgtctcctctatataaactctta 33799157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 388
Target Start/End: Original strand, 37039977 - 37040062
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||| ||||||||||| ||||| ||||||   ||||||||||    |||||||||||||||| |||||||| ||||||||||||    
T  37039977 gaaattggaggcctaactcatccttaaaaactaattcataaggtgagaattgtctcctctatattaactcttatcaagagtcttat 37040062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 320 - 388
Target Start/End: Original strand, 32515918 - 32515986
Alignment:
Q  320 ttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    ||||||| |||||||||||||||  ||  ||||| |||||||||||||||||| || ||||||||||||    
T  32515918 ttatccttaaaaaccggttcatatagtgatgattatctcctctatataaactcctatcaagagtcttat 32515986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 303 - 388
Target Start/End: Original strand, 42637737 - 42637826
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgat----tgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||| |||| |||||| ||||| |||||||||||||||||||   |||    |||||||| |||||||||||||| ||||||||||||    
T  42637737 gaaattggaggtctaactcatccttaaaaaccggttcataaggtgaggattgtctgtctcctttatataaactcttatcaagagtcttat 42637826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 312 - 388
Target Start/End: Complemental strand, 44367879 - 44367803
Alignment:
Q  312 ggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    ||||||||| || || |||||| ||||||||||||   ||||| |||||||||||||||||||| ||||||| ||||    
T  44367879 ggcctaactaattcttaaaaactggttcataaggtgaggattgcctcctctatataaactcttatcaagagttttat 44367803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 303 - 389
Target Start/End: Complemental strand, 11414474 - 11414387
Alignment:
Q  303 gaaatttgaggcctaacttatcctca-aaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttatt 389  Q
    |||||||||||||||||| ||||| | |||||||| |  ||||||   ||||||||||||| |||||||||||  |||||||||||||    
T  11414474 gaaatttgaggcctaactcatccttacaaaaccggcttctaaggtgaggattgtctcctctttataaactcttctcaagagtcttatt 11414387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 303 - 389
Target Start/End: Original strand, 19820521 - 19820608
Alignment:
Q  303 gaaatttgaggcctaacttatcctca-aaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttatt 389  Q
    |||||||||||||||||| ||||| | ||||||||||  ||||||   ||||||||||||| |||||||||||  ||||||| |||||    
T  19820521 gaaatttgaggcctaactcatccttacaaaaccggtttgtaaggtgaggattgtctcctctttataaactcttctcaagagttttatt 19820608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 329 - 388
Target Start/End: Original strand, 29763716 - 29763775
Alignment:
Q  329 aaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||||||||||||| | | || |||||||||| |||||||||||| ||||||||||||    
T  29763716 aaaaccggttcataagatggggagtgtctcctctttataaactcttatcaagagtcttat 29763775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 317 - 388
Target Start/End: Complemental strand, 40927126 - 40927055
Alignment:
Q  317 aacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||| ||||| ||||||  ||||||||| |   |||||||||||||||||||||||||| ||||||||||||    
T  40927126 aactcatccttaaaaactagttcataagatgaggattgtctcctctatataaactcttatcaagagtcttat 40927055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 26915179 - 26915141
Alignment:
Q  350 gattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  26915179 gattgtctcctctatataaactcttatcaagagtcttat 26915141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 40926766 - 40926728
Alignment:
Q  350 gattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  40926766 gattgtctcctctatataaactcttatcaagagtcttat 40926728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 50338423 - 50338461
Alignment:
Q  350 gattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  50338423 gattgtctcctctatataaactcttatcaagagtcttat 50338461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 311 - 375
Target Start/End: Original strand, 19984415 - 19984479
Alignment:
Q  311 aggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactctta 375  Q
    |||||||||| ||||| ||||||||| || ||||||   ||||| ||||||||||||||||||||    
T  19984415 aggcctaactcatccttaaaaaccggatcgtaaggtgcggattgcctcctctatataaactctta 19984479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 296 - 388
Target Start/End: Original strand, 39268864 - 39268956
Alignment:
Q  296 gattaaagaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||| |||||| |||| |||||| ||||| ||||||||||| |||||||   ||||  || |||||||||||||| || ||| ||||||||    
T  39268864 gattaaggaaattggaggtctaactcatccttaaaaaccggtttataaggtgaggattaccttctctatataaactcctatcaatagtcttat 39268956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 26927201 - 26927158
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaaccggttcataaggt 346  Q
    |||||| ||||||||||| ||||| |||||||||||||||||||    
T  26927201 gaaattggaggcctaactcatccttaaaaaccggttcataaggt 26927158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 388
Target Start/End: Original strand, 4029637 - 4029723
Alignment:
Q  303 gaaatttgaggcctaacttatcctca-aaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||||| ||||||||| ||||| | ||||||||||  ||||||   |||||| |||||| |||||||||||  ||||||||||||    
T  4029637 gaaatttggggcctaactcatccttacaaaaccggtttgtaaggtgaagattgtatcctctttataaactcttctcaagagtcttat 4029723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 388
Target Start/End: Original strand, 50203850 - 50203936
Alignment:
Q  303 gaaatttgaggcctaacttatcctca-aaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||||| ||||||||| ||||| | |||||||||| |||||||   || || ||||||| |||||||||||  ||||||||||||    
T  50203850 gaaatttggggcctaactcatccttacaaaaccggtttataaggtgaggagtgcctcctctttataaactcttctcaagagtcttat 50203936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 497
Target Start/End: Complemental strand, 54905178 - 54905141
Alignment:
Q  460 acttttaagatcgattaaaccgacttaaagagtgattg 497  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  54905178 acttttaagatcggttaaaccgacttaaaaagtgattg 54905141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 386
Target Start/End: Original strand, 4191115 - 4191199
Alignment:
Q  303 gaaatttgaggcctaacttatcctca-aaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtctt 386  Q
    |||||||| ||||||||| ||||| | |||||||| |  ||||||   ||||||||||||| |||||||||||  ||||||||||    
T  4191115 gaaatttggggcctaactcatccttacaaaaccggcttgtaaggtcaggattgtctcctctttataaactcttctcaagagtctt 4191199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 386
Target Start/End: Complemental strand, 50692637 - 50692553
Alignment:
Q  303 gaaatttgaggcctaacttatcctca-aaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtctt 386  Q
    |||||||| ||||||||| ||||| | |||||||| |  ||||||   ||||| ||||||| |||||||||||| ||||||||||    
T  50692637 gaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggattgcctcctctttataaactcttatcaagagtctt 50692553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 298 - 388
Target Start/End: Original strand, 14115480 - 14115570
Alignment:
Q  298 ttaaagaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||| |||||| ||||||||||| ||||| |||||| ||||||||||||   |||||||||||||||||||||||||| ||||||||||||    
T  14115480 ttaacgaaattggaggcctaactcatccttaaaaacaggttcataaggtaaggattgtctcctctatataaactcttatcaagagtcttat 14115570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 3640316 - 3640231
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||| ||||||||||| ||||| |||||||||||||||| ||   |||||||||||||||||||||||||| ||||||||||||    
T  3640316 gaaattagaggcctaactcatccttaaaaaccggttcataaagtgaggattgtctcctctatataaactcttatcaagagtcttat 3640231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 41743646 - 41743561
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||| ||||||||||| ||||| |||||||||||||||||||   ||||| |||||||||||||||||||| ||||||||||||    
T  41743646 gaaattggaggcctaactcatccttaaaaaccggttcataaggtgaggattgcctcctctatataaactcttatcaagagtcttat 41743561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 303 - 388
Target Start/End: Original strand, 45684383 - 45684468
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||| ||||||||||| ||||| |||||| ||||||||||||   ||||| |||||| |||||| |||||||||||||||||||    
T  45684383 gaaattggaggcctaactcatccttaaaaactggttcataaggtgaggattgcctcctccatataagctcttaccaagagtcttat 45684468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 298 - 388
Target Start/End: Original strand, 8304944 - 8305034
Alignment:
Q  298 ttaaagaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||| |||||| ||||||| ||| || || ||||| |||||||||||||   |||||||||||||||||||||||||| ||| ||||||||    
T  8304944 ttaatgaaattggaggcctgactcattcttaaaaatcggttcataaggtgaggattgtctcctctatataaactcttatcaaaagtcttat 8305034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 303 - 388
Target Start/End: Original strand, 14115739 - 14115824
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||| |||||| |||| ||||| |||||||||||||||||||   |||||  ||||||||||||||||||| |||| |||||||    
T  14115739 gaaattggaggcccaactcatccttaaaaaccggttcataaggtgaggattgcatcctctatataaactcttatcaagtgtcttat 14115824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 9758414 - 9758329
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtga-ttgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||| |||||  |||||||||| |||||||||||| |||| | | || |||||||||||||||||||||||| ||||||||||||    
T  9758414 gaaattggaggctaaacttatccttaaaaaccggttcttaagat-gagagttgtctcctctatataaactcttatcaagagtcttat 9758329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 56511408 - 56511322
Alignment:
Q  303 gaaatttgaggcctaacttatcctca-aaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||||| ||||||||| ||||| | ||||||||||||||||||   || || ||||||| |||||||||||| ||||||||||||    
T  56511408 gaaatttggggcctaactcatccttacaaaaccggttcataaggtgaggagtgcctcctctttataaactcttatcaagagtcttat 56511322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 298 - 388
Target Start/End: Complemental strand, 3640573 - 3640481
Alignment:
Q  298 ttaaagaaatttgaggcctaacttatcctcaaaaa--ccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||| |||||| ||||||||||| ||||| |||||  |||||||| |||||   ||||| ||||||||| |||||||||| ||||||||||||    
T  3640573 ttaatgaaattggaggcctaactcatccttaaaaaaaccggttcagaaggtgaggattgcctcctctatttaaactcttatcaagagtcttat 3640481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 297 - 388
Target Start/End: Complemental strand, 14945260 - 14945168
Alignment:
Q  297 attaaagaaatttgaggcctaacttatcctca-aaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    ||||| |||||| |||| |||||| ||||| | ||||||||||||||||||   |||||  |||||||||||||||||| | |||||||||||    
T  14945260 attaatgaaattggaggtctaactcatccttacaaaaccggttcataaggtgaggattgcatcctctatataaactctttcgaagagtcttat 14945168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 388
Target Start/End: Original strand, 42561859 - 42561945
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaaccggttca-taaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||| ||||||||||| ||||| |||||  |||||| ||||||  |||||| |||||||||||||| | ||| ||||||||||||    
T  42561859 gaaattggaggcctaactcatccttaaaaattggttcaataaggtgatgattgcctcctctatataaaattttatcaagagtcttat 42561945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 56511615 - 56511529
Alignment:
Q  303 gaaatttgaggcctaacttatcctca-aaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||||| ||||||||| ||||| | |||| |||||||||||||   || || ||||||| |||||||||||| ||||||||||||    
T  56511615 gaaatttggggcctaactcatccttacaaaatcggttcataaggtgaggagtgcctcctctttataaactcttatcaagagtcttat 56511529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 303 - 391
Target Start/End: Complemental strand, 5488478 - 5488389
Alignment:
Q  303 gaaatttgaggcctaacttatcctca-aaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttattta 391  Q
    |||||||||||||||||| ||||| | |||||||| |  ||||||   ||||| ||||||| |||||||||||  |||||||||||||||    
T  5488478 gaaatttgaggcctaactcatccttacaaaaccggcttgtaaggtgaggattgcctcctctttataaactcttctcaagagtcttattta 5488389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 303 - 384
Target Start/End: Original strand, 45684168 - 45684249
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtc 384  Q
    |||||| ||||||||||| | ||| |||||||| ||||| ||||   |||||||| ||||||||||||| ||| ||||||||    
T  45684168 gaaattggaggcctaactcaaccttaaaaaccgattcatcaggtgaggattgtcttctctatataaacttttatcaagagtc 45684249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 303 - 388
Target Start/End: Original strand, 47491840 - 47491925
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||| ||||||||||| ||||| ||||||| |||| |||| |   ||||| ||||| ||||||||||| || ||||||||||||    
T  47491840 gaaattggaggcctaactcatccttaaaaaccagttcttaagttgaggattgcctcctttatataaactcctatcaagagtcttat 47491925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 329 - 388
Target Start/End: Complemental strand, 14944978 - 14944919
Alignment:
Q  329 aaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||| |||||||||||||   ||| | ||||||||| |||||||||||||||||||||||    
T  14944978 aaaaacggttcataaggtgaggatcgcctcctctatgtaaactcttaccaagagtcttat 14944919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 7892693 - 7892731
Alignment:
Q  350 gattgtctcctctatataaactcttaccaagagtcttat 388  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  7892693 gattgtctcctctatataaactcatatcaagagtcttat 7892731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 53864016 - 53863930
Alignment:
Q  303 gaaatttgaggcctaacttatcctca-aaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||||| || |||||| ||||| | ||||||||||||||||||   || |||||||||| |||||||| ||| ||| ||||||||    
T  53864016 gaaatttgtggtctaactcatccttacaaaaccggttcataaggtgaggagtgtctcctctttataaactattatcaaaagtcttat 53863930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 391
Target Start/End: Complemental strand, 23350862 - 23350821
Alignment:
Q  350 gattgtctcctctatataaactcttaccaagagtcttattta 391  Q
    ||||||||||||| |||| ||||||| |||||||||||||||    
T  23350862 gattgtctcctctttatatactcttatcaagagtcttattta 23350821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 297 - 388
Target Start/End: Original strand, 4563679 - 4563770
Alignment:
Q  297 attaaagaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    ||||| |||||| |||||||| || ||||| |||||||||||||||||||   ||||||||||||||| |||||||||| ||| ||||||||    
T  4563679 attaatgaaattggaggcctacctcatccttaaaaaccggttcataaggtgaggattgtctcctctatgtaaactcttatcaaaagtcttat 4563770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 303 - 388
Target Start/End: Original strand, 18873188 - 18873273
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||| |||| |||||| ||||| |||||| ||||||||||||   ||||| |||||||||||||||||||| ||| ||||||||    
T  18873188 gaaattggaggtctaactcatccttaaaaactggttcataaggtgaggattgcctcctctatataaactcttatcaatagtcttat 18873273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 353 - 391
Target Start/End: Complemental strand, 17135579 - 17135541
Alignment:
Q  353 tgtctcctctatataaactcttaccaagagtcttattta 391  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  17135579 tgtctcctctttataaactcttatcaagagtcttattta 17135541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 386
Target Start/End: Original strand, 28358028 - 28358112
Alignment:
Q  303 gaaatttgaggcctaacttatcctca-aaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtctt 386  Q
    |||||||| ||||||||| ||||| | |||||||| |  ||||||   ||||||||||||| |||||||||||  ||||||||||    
T  28358028 gaaatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggattgtctcctctttataaactcttctcaagagtctt 28358112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 305 - 388
Target Start/End: Complemental strand, 38376840 - 38376756
Alignment:
Q  305 aatttgaggcctaacttatcctca-aaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||| ||||||||| ||||| | |||||||| |  ||||||   ||||||||||||| |||||||||||  ||||||||||||    
T  38376840 aatttggggcctaactcatccttacaaaaccggcttgtaaggtgaggattgtctcctctttataaactcttctcaagagtcttat 38376756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 26394661 - 26394576
Alignment:
Q  303 gaaatttgaggcctaacttatcctcaaaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||| ||||||||| | || || ||||| |||||| ||||||   ||||| |||||||||||||||||||| ||||||||||||    
T  26394661 gaaattggaggcctaagtcattcttaaaaatcggttcttaaggtgaggattgcctcctctatataaactcttatcaagagtcttat 26394576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 340 - 388
Target Start/End: Original strand, 21110003 - 21110051
Alignment:
Q  340 ataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    ||||||| | ||||| |||||||||||||||||||||||||| ||||||    
T  21110003 ataaggtggggattgcctcctctatataaactcttaccaagaatcttat 21110051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 19291959 - 19291997
Alignment:
Q  350 gattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||||||||||||| ||||||||| ||||||||||||    
T  19291959 gattgtctcctctatacaaactcttatcaagagtcttat 19291997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 25999134 - 25999048
Alignment:
Q  303 gaaatttgaggcctaacttatcctca-aaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||||| ||||||||| || || | ||||||||||||||||||   || |||||||||| |||||||| ||| || |||||||||    
T  25999134 gaaatttggggcctaactcattcttacaaaaccggttcataaggtgaggagtgtctcctctttataaactattatcatgagtcttat 25999048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 26098453 - 26098367
Alignment:
Q  303 gaaatttgaggcctaacttatcctca-aaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||||| ||||||||| ||||| | |||| |||||||||||||   || |||||||||| |||||||| ||| || |||||||||    
T  26098453 gaaatttggggcctaactcatccttacaaaagcggttcataaggtgaggagtgtctcctctttataaactattatcatgagtcttat 26098367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 26098865 - 26098779
Alignment:
Q  303 gaaatttgaggcctaacttatcctca-aaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagtcttat 388  Q
    |||||||| ||||||||| || || | ||||||||||||||||||   || |||||||||| |||||||| ||| || |||||||||    
T  26098865 gaaatttggggcctaactcattcttacaaaaccggttcataaggtgaggagtgtctcctctttataaactattatcatgagtcttat 26098779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 451 - 497
Target Start/End: Complemental strand, 26219259 - 26219213
Alignment:
Q  451 ttgttggatacttttaagatcgattaaaccgacttaaagagtgattg 497  Q
    |||||||| ||||||||||||||||||||||| |||||  |||||||    
T  26219259 ttgttggagacttttaagatcgattaaaccgatttaaaatgtgattg 26219213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 383
Target Start/End: Original strand, 12134476 - 12134557
Alignment:
Q  303 gaaatttgaggcctaacttatcctca-aaaaccggttcataaggttgtgattgtctcctctatataaactcttaccaagagt 383  Q
    |||||||| ||||||||| ||||| | ||||||||||  |||||||  || |||||||||| |||||||||||  |||||||    
T  12134476 gaaatttggggcctaactcatccttacaaaaccggtttgtaaggttaggagtgtctcctctttataaactcttctcaagagt 12134557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University