View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2851_high_4 (Length: 571)
Name: NF2851_high_4
Description: NF2851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2851_high_4 |
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| [»] scaffold0224 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 5e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 286 - 557
Target Start/End: Complemental strand, 42921670 - 42921401
Alignment:
| Q |
286 |
gcaatttactaaactaacatttatttaaattggtttgaatgggggcaaacagannnnnnnggtctagataaaaaggttgatatttgttaatttaaacctt |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42921670 |
gcaatttactaaactaacatttatttaaattggtttgaatgggggcaaacagatttttttggtctagataaaaaggttgatatttgttaatttaaacctt |
42921571 |
T |
|
| Q |
386 |
aatatttttaggttgatatagg--nnnnnnnnnngacaagtaggttgatataggttaacaaccccattttaattaatatttccttcggnnnnnnnnccca |
483 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
42921570 |
aatatttttaggttgatataggttttttttttttgacaagtaggttgatataggttaacaaccccatt----ttaatatttccttaaaaaaaaaaaacca |
42921475 |
T |
|
| Q |
484 |
ttttaatattatatgtatgtatatgacttttataaatctaagttgtcttattcttcctccttcctattgtcccc |
557 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42921474 |
ttttaatattatatgtatgtatatgacttttataaatctaagttgtcttattcttcctccttcctattgtcccc |
42921401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 42921932 - 42921740
Alignment:
| Q |
16 |
caatgtattcatctaaaagttggttaaataataaaccatttattctctttt--ataaattgtgcatgacataatttgttctctttttattgtatgatata |
113 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42921932 |
caatgtattcatctaaaagttggttaaataataaaacatttattctcttttgaataaattgtgcatgacataattcgttctctttttattgtatgatata |
42921833 |
T |
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| Q |
114 |
ttttattgggagttgctaacttatacaacctaaaaatattaagatttaagttagcaagtttgtacatttttatttggaaaaatactcacttgtaactatt |
213 |
Q |
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| T |
42921832 |
ttttattgggggttgctaacttatacaacctaaaaatattaagatttaagttag----------catttttatttggaaaaatactcacttgtaactatt |
42921743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 286 - 557
Target Start/End: Original strand, 16661 - 16930
Alignment:
| Q |
286 |
gcaatttactaaactaacatttatttaaattggtttgaatgggggcaaacagannnnnnnggtctagataaaaaggttgatatttgttaatttaaacctt |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
16661 |
gcaatttactaaactaacatttatttaaattggtttgaatgggggcaaacagatttttttgttctagataaaaaggttgatatttgttaatttaaacctt |
16760 |
T |
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| Q |
386 |
aatatttttaggttgatataggnnnnnnnnnn--gacaagtaggttgatataggttaacaaccccattttaattaatatttccttcggnnnnnnnnccca |
483 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
16761 |
aatatttttaggttgatataggttttttttttttgacaagtaggttgatataggttaacaaccccattttaat----atttccttaaaaaaaaaaaacca |
16856 |
T |
|
| Q |
484 |
ttttaatattatatgtatgtatatgacttttataaatctaagttgtcttattcttcctccttcctattgtcccc |
557 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16857 |
ttttaatattatatgtatgtatatgacttttataaatctaagttgtcttattcttcctccttcctattgtcccc |
16930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 16399 - 16591
Alignment:
| Q |
16 |
caatgtattcatctaaaagttggttaaataataaaccatttattctctttt--ataaattgtgcatgacataatttgttctctttttattgtatgatata |
113 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
16399 |
caatgtattcatctaaaagttggttaaataataaaacatttattctcttttgaataaattgtgcatgacataattcgttctctttttattgtatgatata |
16498 |
T |
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| Q |
114 |
ttttattgggagttgctaacttatacaacctaaaaatattaagatttaagttagcaagtttgtacatttttatttggaaaaatactcacttgtaactatt |
213 |
Q |
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| T |
16499 |
ttttattgggggttgctaacttatacaacctaaaaatattaagatttaagttag----------catttttatttggaaaaatactcacttgtaactatt |
16588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 12323918 - 12323970
Alignment:
| Q |
139 |
caacctaaaaatattaagatttaagttagcaagtttgtacatttttatttgga |
191 |
Q |
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|||||||||||||||||||||||||||| ||||| || | |||||||||||| |
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| T |
12323918 |
caacctaaaaatattaagatttaagttaacaagtgtgcatttttttatttgga |
12323970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 25155902 - 25155954
Alignment:
| Q |
139 |
caacctaaaaatattaagatttaagttagcaagtttgtacatttttatttgga |
191 |
Q |
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|||||||||||||||||| | ||||||| |||| |||||||||| ||||||| |
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| T |
25155902 |
caacctaaaaatattaaggtctaagttataaagtgtgtacattttgatttgga |
25155954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 31612309 - 31612257
Alignment:
| Q |
139 |
caacctaaaaatattaagatttaagttagcaagtttgtacatttttatttgga |
191 |
Q |
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||||||||||| |||||| | ||||||||||| | ||||| |||||||||||| |
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| T |
31612309 |
caacctaaaaacattaaggtctaagttagcaaatgtgtacctttttatttgga |
31612257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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