View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2851_high_6 (Length: 500)
Name: NF2851_high_6
Description: NF2851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2851_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 4758403 - 4758673
Alignment:
| Q |
18 |
atgctgcgcataacaacaatctcatttgcaaattttagacgggcaaaagttgatgttaacatcaatggttagttattccattccatatatttacaatgtt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4758403 |
atgctgcgcataacaacaatctcatttgcaaattttagacgggcaaaagttgatgttaacatcaatggttagttattccattccatatattcacaatgtt |
4758502 |
T |
|
| Q |
118 |
tcctcagttgataattttgtacaacattacatacaacttcctagcgtggtttggagttccggtaaaacaaagtatgggttttaaattgcagttgcagttg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4758503 |
tcctcagttgataattttgtacaacattacatacaacttcctagcttggtttggagttccggtaaaacaaagtatgggttttaaattgcagttgcagtct |
4758602 |
T |
|
| Q |
218 |
caatttgtaacaaacctttaattgaagacaaatgcgaacaatgcagctgcaattacgattgcagtatctct |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4758603 |
caatttgtaacaaacctttaattgaagacaaatgcgaacaatgcagctgcaattacgattgcaggatctct |
4758673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 335 - 500
Target Start/End: Original strand, 4758720 - 4758885
Alignment:
| Q |
335 |
ttacaggttatacaataccaaaaggatggaaggtcctggtttggaatagaggtgttcacatggatcctgaaatttacaccaatccaaaggaatatgatcc |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4758720 |
ttacaggttatacaataccaaaaggatggaaggtcctggtttggaatagaggtgttcacatggatcctgaaatttacaccaatccaaaggaatatgatcc |
4758819 |
T |
|
| Q |
435 |
ttccagatgggaggtatgtactccaatccaaaagaatttgttattttcttaatgcattggtgaatt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4758820 |
ttccagatgggaggtatgtactccaatccaagagaatttgttattttcttaatgcattggtgaatt |
4758885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 338 - 454
Target Start/End: Original strand, 4750413 - 4750529
Alignment:
| Q |
338 |
caggttatacaataccaaaaggatggaaggtcctggtttggaatagaggtgttcacatggatcctgaaatttacaccaatccaaaggaatatgatccttc |
437 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||| ||| |||| |||||||||| ||||||||| |
|
|
| T |
4750413 |
caggttatactataccaaaaggatggaaagtcctggtatggaacagaggtgttcacatggatcctgaaaactaccccaacccaaaggaatttgatccttc |
4750512 |
T |
|
| Q |
438 |
cagatgggaggtatgta |
454 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
4750513 |
cagatgggaggtatgta |
4750529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 338 - 454
Target Start/End: Original strand, 4741149 - 4741265
Alignment:
| Q |
338 |
caggttatacaataccaaaaggatggaaggtcctggtttggaatagaggtgttcacatggatcctgaaatttacaccaatccaaaggaatatgatccttc |
437 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||| | ||||| ||||||||||||||||||||||||| ||| |||| |||||||||| ||||||||| |
|
|
| T |
4741149 |
caggttatactataccaaaaggatggaaagtcctgatatggaacagaggtgttcacatggatcctgaaaactaccccaacccaaaggaatttgatccttc |
4741248 |
T |
|
| Q |
438 |
cagatgggaggtatgta |
454 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
4741249 |
cagatgggaggtatgta |
4741265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 4750083 - 4750174
Alignment:
| Q |
18 |
atgctgcgcataacaacaatctcatttgcaaattttagacgggcaaaagttgatgttaacatcaatggttagttattccattccatatattt |
109 |
Q |
| |
|
|||||||||| ||||| || |||||||| || ||||||| ||||||||||||| ||||| |||||||||||| ||| |||||||||||||| |
|
|
| T |
4750083 |
atgctgcgcaaaacaagtatttcatttgcgaactttagacaggcaaaagttgattttaacctcaatggttagtcatttcattccatatattt |
4750174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University