View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2851_low_1 (Length: 747)
Name: NF2851_low_1
Description: NF2851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2851_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 593; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 9 - 657
Target Start/End: Complemental strand, 7659825 - 7659177
Alignment:
| Q |
9 |
gagatgaactgaggagatttttcggagcattcgccaccgcggaccataaggtgcaaacacaagatcttgatagttataagctatatatttagctccggtg |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7659825 |
gagatgaactgaggagatttttcggagcattcgccaccgcggaccataaggtgcaaacacaaggtcttgatagttataagctatatatttagctccggtg |
7659726 |
T |
|
| Q |
109 |
ttgggtggccggctactaaagttagcatcatgaacctttaagaattgttcggcaacggagcctgaagccgccacgataacgtccacaaaacctaatttga |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7659725 |
ttgggtggccggctactaaagttagcatcatgaacctttaagaattgttcggcaacggagccagaagccgccacgataacgtccacaaaacctaatttga |
7659626 |
T |
|
| Q |
209 |
ggtgcatcaaagggccatgaatttttgccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttgg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7659625 |
ggtgcatcaaagggccatgaatttttgccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttgg |
7659526 |
T |
|
| Q |
309 |
tccaggtggaagtggtagtgatgaagatctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctaatgcaatgaaccataga |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7659525 |
tccaggtggaagtggtagtgatgaagatctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctaatgcaatgaaccataga |
7659426 |
T |
|
| Q |
409 |
gacatggttaattaatttgtgttatattgtggctatggttatgaaatatatttgatgatgataatatttttgatgttgttgtctcattaagctaagcctc |
508 |
Q |
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| T |
7659425 |
gacatggttaactattttgtgtactgttgtggctatgattatgaaatatatttgatgatgataatatttttgatgttgttgtctcattaagctatgcctc |
7659326 |
T |
|
| Q |
509 |
aatatgcttggtatttataacgaatcatttctttgactttacacgtttctatgactttacacggtttgttcatattgggacgtacgattgttagacatgg |
608 |
Q |
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|||||||||||||||||||| ||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7659325 |
aatatgcttggtatttataaggaatcgtttctttgagtttacacgtttctacgactttacacggtttgttcatattgggacgtacgattgttagacatgg |
7659226 |
T |
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| Q |
609 |
tgatcacttgtgcaagcaattggcgattggtattggtcattagacaagg |
657 |
Q |
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| T |
7659225 |
tgatcacttgtgcaagcaattgccgattggtattggtcattagacaagg |
7659177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 9 - 457
Target Start/End: Original strand, 7623860 - 7624305
Alignment:
| Q |
9 |
gagatgaactgaggagatttttcggagcattcgccaccgcggaccataaggtgcaaacacaagatcttgatagttataagctatatatttagctccggtg |
108 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7623860 |
gagatgaacggaggagatttttcggagcattcgccacctcggaccataaggggcaaacacaagatcttgatagttataagctatatatttagctccggtg |
7623959 |
T |
|
| Q |
109 |
ttgggtggccggctactaaagttagcatcatgaacctttaagaattgttcggcaacggagcctgaagccgccacgataacgtccacaaaacctaatttga |
208 |
Q |
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| T |
7623960 |
ttgggtggccggctactaaagttagcatcatgaacctttaagaattgttcggcaacggagcctgaagccgccacgataacgtccacaaaacctaatttga |
7624059 |
T |
|
| Q |
209 |
ggtgcatcaaagggccatgaatttttgccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttgg |
308 |
Q |
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| T |
7624060 |
ggtgcattaaagggccatggatttttgccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttgg |
7624159 |
T |
|
| Q |
309 |
tccaggtggaagtggtagtgatgaagatctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctaatgcaatgaaccataga |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7624160 |
tccaggtggaagtggtagtgatgaagatctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctattgcaatgaaccataga |
7624259 |
T |
|
| Q |
409 |
gacatggttaattaatttgtgttatat-tgtggctatggttatgaaatat |
457 |
Q |
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| T |
7624260 |
gacatggttaatttat----gttatgtatgtggctatggttatgaaatat |
7624305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 24 - 414
Target Start/End: Complemental strand, 7675437 - 7675047
Alignment:
| Q |
24 |
gatttttcggagcattcgccaccgcggaccataaggtgcaaacacaagatcttgatagttataagctatatatttagctccggtgttgggtggccggcta |
123 |
Q |
| |
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|||||||| ||| | |||||||| ||||||||||| |||||||||| |||||||| |||||| |||| || |||||||||| ||||||||||||||| |
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| T |
7675437 |
gatttttctgagtagtcgccaccttggaccataaggaccaaacacaaggtcttgataattataacctatgtacttagctccggcattgggtggccggcta |
7675338 |
T |
|
| Q |
124 |
ctaaagttagcatcatgaacctttaagaattgttcggcaacggagcctgaagccgccacgataacgtccacaaaacctaatttgaggtgcatcaaagggc |
223 |
Q |
| |
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||||||||||||||||| ||||||||||||||||| || |||||| | |||||||||||||| || ||||| | ||||||||||||||||||||||||| |
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| T |
7675337 |
ctaaagttagcatcatgtacctttaagaattgttccgccacggaggccgaagccgccacgatcacatccaccgagcctaatttgaggtgcatcaaagggc |
7675238 |
T |
|
| Q |
224 |
catgaatttttgccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttggtccaggtggaagtgg |
323 |
Q |
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||| ||| ||||||| ||||| ||| |||||||| ||||| || | |||||| | |||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
7675237 |
cataggtttcagccaaggttgcaagagattggtgtggtgcagggccaaggtgtggtaagttacctattattggccatggttttggtccaggtgggagtgg |
7675138 |
T |
|
| Q |
324 |
tagtgatgaagatctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctaatgcaatgaaccatagagacatg |
414 |
Q |
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||||||||||| |||| ||||||| |||| ||||||||||| | ||| ||||| || |||||| |||||||||| ||||||||||||| |
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| T |
7675137 |
tagtgatgaagttcttgttgcaaacttcaccaaacggtatattaagattgataatatgcaactagagaatgcaatgagccatagagacatg |
7675047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 484 - 553
Target Start/End: Original strand, 7624415 - 7624485
Alignment:
| Q |
484 |
ttgttgtctcattaagctaagcctcaatatgcttggtatttata-acgaatcatttctttgactttacacg |
553 |
Q |
| |
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|||||||| |||| ||||||||||||| |||||||||||||||| | ||| | ||||| |||||||||||| |
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| T |
7624415 |
ttgttgtcacattgagctaagcctcaacatgcttggtatttatagaggaaacgtttctctgactttacacg |
7624485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 551 - 599
Target Start/End: Original strand, 7624465 - 7624513
Alignment:
| Q |
551 |
acgtttctatgactttacacggtttgttcatattgggacgtacgattgt |
599 |
Q |
| |
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| T |
7624465 |
acgtttctctgactttacacggtttgttcatcttggaacgtaggattgt |
7624513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 179
Target Start/End: Complemental strand, 45477762 - 45477623
Alignment:
| Q |
40 |
cgccaccgcggaccataaggtgcaaacacaagatcttgatagttataagctatatatttagctccggtgttgggtggccggctactaaagttagcatcat |
139 |
Q |
| |
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| T |
45477762 |
cgccaccgtggtccataaggagcaaaaacaagatcttgataattatatgctaagtatttggcgccggagttagttggccggctagaaaaattggtatcat |
45477663 |
T |
|
| Q |
140 |
gaacctttaagaattgttcggcaacggagcctgaagccgc |
179 |
Q |
| |
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|||| |||||||||||||| || || ||| | |||||||| |
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| T |
45477662 |
gaacttttaagaattgttcagcgaccgaggcggaagccgc |
45477623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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