View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2851_low_10 (Length: 434)
Name: NF2851_low_10
Description: NF2851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2851_low_10 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 11702244 - 11701828
Alignment:
| Q |
1 |
agtaattagtttaaaataaattaataacggctgnnnnnnnngaattttttgtctaatggtagcagaacaataaaatgagtggaatcactgaaaagaaatt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11702244 |
agtaattagtttaaaataaattaataacggctgaaaaaaaaagaatttttgtctaatggtagcagaacaataaaatgagtggaatcactgaaaagaaatt |
11702145 |
T |
|
| Q |
101 |
ctataacggtaccgatactcaaatgatctattaactatggcgtaaaaattcaagacgtttgagagaagtagttcattttagacaaaaaataaaataggta |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11702144 |
ctataacggtaccgatactcaaatgaactattaactatggcgtaaaaattcaagacgtttgagagaagtagttcattttagacaaaaaataaaataggta |
11702045 |
T |
|
| Q |
201 |
gaagtgacgaacagaactgaccaagatatagataagagaagcaagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11702044 |
gaagtgacgaacagaactgaccaagatatagataagagaagcaagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagaga |
11701945 |
T |
|
| Q |
301 |
ggaagtagagaagctgttccagcccaaacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaaattccctt |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11701944 |
ggaagtagagaagctgttccagcccaaacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaaattccctt |
11701845 |
T |
|
| Q |
401 |
gaattccataatatgat |
417 |
Q |
| |
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||||||||||||||||| |
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| T |
11701844 |
gaattccataatatgat |
11701828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 226 - 417
Target Start/End: Complemental strand, 11798063 - 11797872
Alignment:
| Q |
226 |
atatagataagagaagcaagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagagaggaagtagagaagctgttccagccc |
325 |
Q |
| |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||| ||| |
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| T |
11798063 |
atatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccaaccc |
11797964 |
T |
|
| Q |
326 |
aaacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaaattcccttgaattccataatatgat |
417 |
Q |
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||||||| ||||| | ||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11797963 |
aaacattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgat |
11797872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 216 - 417
Target Start/End: Complemental strand, 11676136 - 11675935
Alignment:
| Q |
216 |
actgaccaagatatagataagagaagcaagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagagaggaagtagagaagct |
315 |
Q |
| |
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||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
11676136 |
actgaccaagatataaatgagagaagcgagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagca |
11676037 |
T |
|
| Q |
316 |
gttccagcccaaacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaaattcccttgaattccataatatg |
415 |
Q |
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||||||||||| ||| ||||||| |||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
11676036 |
actccagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgatatcaagttcccttgaatcccataatatg |
11675937 |
T |
|
| Q |
416 |
at |
417 |
Q |
| |
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|| |
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| T |
11675936 |
at |
11675935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 216 - 417
Target Start/End: Complemental strand, 11684415 - 11684214
Alignment:
| Q |
216 |
actgaccaagatatagataagagaagcaagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagagaggaagtagagaagct |
315 |
Q |
| |
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||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
11684415 |
actgaccaagatataaatgagagaagcgagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagca |
11684316 |
T |
|
| Q |
316 |
gttccagcccaaacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaaattcccttgaattccataatatg |
415 |
Q |
| |
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||||||||||| ||| ||||||| |||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
11684315 |
actccagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgatatcaagttcccttgaatcccataatatg |
11684216 |
T |
|
| Q |
416 |
at |
417 |
Q |
| |
|
|| |
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| T |
11684215 |
at |
11684214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 220 - 417
Target Start/End: Complemental strand, 11696228 - 11696031
Alignment:
| Q |
220 |
accaagatatagataagagaagcaagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagagaggaagtagagaagctgttc |
319 |
Q |
| |
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||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||| |
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| T |
11696228 |
accaatatatagatgagagaagcaagcatgattgtgcggtagcgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttc |
11696129 |
T |
|
| Q |
320 |
cagcccaaacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaaattcccttgaattccataatatgat |
417 |
Q |
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||||||||| ||| ||||| | ||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11696128 |
cagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgat |
11696031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 202 - 392
Target Start/End: Complemental strand, 11779225 - 11779035
Alignment:
| Q |
202 |
aagtgacgaacagaactgaccaagatatagataagagaagcaagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagagag |
301 |
Q |
| |
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|||||| ||||||||| ||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||| ||||||| |
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| T |
11779225 |
aagtgaagaacagaaccaaccaatacatagataagagaagcaagtatgattgtgtgatagcgtccaagaaaagaatcagcaatgaatgcaccaaagagag |
11779126 |
T |
|
| Q |
302 |
gaagtagagaagctgttccagcccaaacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaa |
392 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
11779125 |
gaaggagagaagcagttccagcccaaacattcacattcttagcagcagttgcagtgctttgtttgagtggccctgttagatatgatatcaa |
11779035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 202 - 392
Target Start/End: Complemental strand, 16688 - 16498
Alignment:
| Q |
202 |
aagtgacgaacagaactgaccaagatatagataagagaagcaagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagagag |
301 |
Q |
| |
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|||||| ||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
16688 |
aagtgaagaacagaaccaaccaatatatagataagagaagcaagtatgattgtgtgatagcgtccaagaaaagaatcagcaacgaaagcacctaagagag |
16589 |
T |
|
| Q |
302 |
gaagtagagaagctgttccagcccaaacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaa |
392 |
Q |
| |
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||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
16588 |
gaagtagagaagcagttccagcccaaatattcacattcttagcagctgttgcagtgctttgtttgagtggtcctgttagatatgatatcaa |
16498 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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