View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2851_low_11 (Length: 431)
Name: NF2851_low_11
Description: NF2851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2851_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 26 - 421
Target Start/End: Complemental strand, 11471800 - 11471404
Alignment:
| Q |
26 |
ttttggtattttcctttactatcgtcattttcattagatccataagatctatcttcttttttagatgtcattaattaaattcaagaggtgataatctgaa |
125 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11471800 |
ttttggtattttcctttactat-gtcattttcattagatccataaaatctatcttcttttttacatgtcattaattaatttcaagaggtgataatctgaa |
11471702 |
T |
|
| Q |
126 |
tgatgtatttaataatttgatccaattcatgatttgtctgattataacagctggggcatcctagttcttgataaaggggacaccatctcttatgattgac |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11471701 |
tgatgtatttaataatttgatccaattcatgatttgtctgattataacagctgggacatcctagttcttgataaaggggacaccatctcttatgattgac |
11471602 |
T |
|
| Q |
226 |
aaacaagtcaatagaattttcttggaccttatcttcatcattctaacataaaattttggttaagacattgaagtctttccctaatgttattgcaattgaa |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11471601 |
aaacaagtcaatagaattttcttggaccttatcttcatcattctaacataaaattttggttaagacattgaagtctttccctaatgttattgcaattgaa |
11471502 |
T |
|
| Q |
326 |
tataatgtgtattactaa-aaaatagcatgagcattgtatactt-gggatagaatgatgtgatgttgtaataagggatctcagtcgttagatgatgat |
421 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11471501 |
tataatgtgtattactaaaaaaatagcatgagcattgtatacttggggatagaatgatgtcatgttgtaataagggatctcagtcgttagatgatgat |
11471404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University