View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2851_low_12 (Length: 422)

Name: NF2851_low_12
Description: NF2851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2851_low_12
NF2851_low_12
[»] chr3 (23 HSPs)
chr3 (1-363)||(50507646-50508008)
chr3 (86-257)||(23483133-23483312)
chr3 (86-257)||(31608195-31608374)
chr3 (362-422)||(50509692-50509752)
chr3 (110-207)||(18167934-18168031)
chr3 (114-256)||(24989750-24989896)
chr3 (138-243)||(41589409-41589509)
chr3 (151-243)||(33393118-33393209)
chr3 (151-216)||(47097654-47097720)
chr3 (20-62)||(5218975-5219017)
chr3 (20-62)||(10049200-10049242)
chr3 (20-62)||(10471439-10471481)
chr3 (20-62)||(13286932-13286974)
chr3 (20-62)||(24348805-24348847)
chr3 (20-62)||(26229374-26229416)
chr3 (20-62)||(28555252-28555294)
chr3 (20-62)||(35846749-35846791)
chr3 (20-62)||(37126716-37126758)
chr3 (20-62)||(47697770-47697812)
chr3 (20-62)||(48458388-48458430)
chr3 (20-62)||(51167262-51167304)
chr3 (20-62)||(51754425-51754467)
chr3 (21-57)||(9116495-9116531)
[»] chr4 (15 HSPs)
chr4 (19-257)||(15506388-15506634)
chr4 (20-209)||(1536828-1537016)
chr4 (129-257)||(7818269-7818405)
chr4 (92-243)||(20292593-20292759)
chr4 (86-146)||(37829699-37829759)
chr4 (20-62)||(3875708-3875750)
chr4 (20-62)||(17445703-17445745)
chr4 (20-62)||(27767678-27767720)
chr4 (20-62)||(35949545-35949587)
chr4 (110-156)||(42130988-42131034)
chr4 (20-62)||(54202333-54202375)
chr4 (20-62)||(56162476-56162518)
chr4 (21-62)||(36309046-36309087)
chr4 (21-62)||(50621666-50621707)
chr4 (20-68)||(39677742-39677790)
[»] chr8 (25 HSPs)
chr8 (105-363)||(1848357-1848629)
chr8 (8-328)||(32910916-32911245)
chr8 (95-243)||(39713255-39713406)
chr8 (29-209)||(35979310-35979490)
chr8 (92-243)||(4006425-4006591)
chr8 (151-216)||(7969381-7969447)
chr8 (128-209)||(43576177-43576258)
chr8 (92-243)||(44704007-44704173)
chr8 (275-331)||(44953554-44953610)
chr8 (19-62)||(16584424-16584467)
chr8 (20-62)||(5458262-5458304)
chr8 (20-62)||(8352382-8352424)
chr8 (20-62)||(20818957-20818999)
chr8 (20-62)||(25487304-25487346)
chr8 (20-62)||(27719244-27719286)
chr8 (20-62)||(29997496-29997538)
chr8 (20-62)||(31097517-31097559)
chr8 (20-62)||(33411047-33411089)
chr8 (20-62)||(35393601-35393643)
chr8 (20-62)||(36781654-36781696)
chr8 (20-62)||(38098864-38098906)
chr8 (86-216)||(38167778-38167916)
chr8 (20-62)||(45084247-45084289)
chr8 (21-62)||(30655004-30655045)
chr8 (271-331)||(35979556-35979616)
[»] chr7 (15 HSPs)
chr7 (6-257)||(41469419-41469679)
chr7 (95-180)||(40524823-40524908)
chr7 (112-317)||(34012732-34012941)
chr7 (112-297)||(21202959-21203152)
chr7 (9-189)||(37544872-37545052)
chr7 (271-331)||(37544791-37544851)
chr7 (20-62)||(3112162-3112204)
chr7 (20-62)||(9741313-9741355)
chr7 (20-77)||(12848443-12848501)
chr7 (20-62)||(18676843-18676885)
chr7 (20-62)||(31588005-31588047)
chr7 (20-62)||(42697409-42697451)
chr7 (20-62)||(44508506-44508548)
chr7 (20-62)||(47455053-47455095)
chr7 (20-68)||(12726299-12726347)
[»] chr2 (12 HSPs)
chr2 (4-216)||(35006313-35006524)
chr2 (138-216)||(31639864-31639942)
chr2 (20-62)||(11124415-11124457)
chr2 (92-138)||(16312899-16312945)
chr2 (20-62)||(17977829-17977871)
chr2 (20-62)||(19390653-19390695)
chr2 (20-62)||(20115064-20115106)
chr2 (20-62)||(21867065-21867107)
chr2 (20-62)||(30787225-30787267)
chr2 (138-243)||(40658629-40658729)
chr2 (334-363)||(35006196-35006225)
chr2 (21-62)||(39430341-39430382)
[»] chr6 (20 HSPs)
chr6 (110-258)||(17314864-17315020)
chr6 (108-216)||(6675217-6675324)
chr6 (92-215)||(29880728-29880859)
chr6 (112-199)||(26947181-26947268)
chr6 (111-165)||(26181103-26181157)
chr6 (125-189)||(14253136-14253201)
chr6 (138-247)||(7082108-7082225)
chr6 (20-62)||(4169667-4169709)
chr6 (20-62)||(4210396-4210438)
chr6 (20-62)||(5545374-5545416)
chr6 (20-62)||(8658990-8659032)
chr6 (217-247)||(8810218-8810248)
chr6 (20-62)||(11590249-11590291)
chr6 (20-62)||(17595951-17595993)
chr6 (20-62)||(25144162-25144204)
chr6 (92-146)||(32173000-32173054)
chr6 (20-62)||(32938488-32938530)
chr6 (20-62)||(33489795-33489837)
chr6 (18-62)||(742938-742982)
chr6 (22-62)||(13889151-13889191)
[»] chr1 (22 HSPs)
chr1 (20-216)||(45926102-45926300)
chr1 (109-189)||(9263495-9263576)
chr1 (138-243)||(24527073-24527173)
chr1 (114-180)||(51547072-51547138)
chr1 (86-243)||(14289555-14289719)
chr1 (138-243)||(32117385-32117497)
chr1 (86-146)||(1702570-1702630)
chr1 (138-216)||(45942122-45942200)
chr1 (151-243)||(3486344-3486435)
chr1 (20-62)||(11335670-11335712)
chr1 (20-62)||(11493690-11493732)
chr1 (20-62)||(13556078-13556120)
chr1 (20-62)||(17926272-17926314)
chr1 (20-62)||(25730002-25730044)
chr1 (20-62)||(25828678-25828720)
chr1 (20-62)||(26770207-26770249)
chr1 (20-62)||(37094234-37094276)
chr1 (20-62)||(40359668-40359710)
chr1 (20-62)||(48542634-48542676)
chr1 (20-62)||(50490804-50490846)
chr1 (20-62)||(52469515-52469557)
chr1 (20-60)||(3994953-3994993)
[»] scaffold0570 (1 HSPs)
scaffold0570 (86-257)||(3802-3981)
[»] chr5 (7 HSPs)
chr5 (86-178)||(6733389-6733480)
chr5 (138-216)||(18522729-18522807)
chr5 (20-62)||(3390914-3390956)
chr5 (20-62)||(8935969-8936011)
chr5 (20-62)||(15472749-15472791)
chr5 (20-62)||(33570152-33570194)
chr5 (20-62)||(35066126-35066168)
[»] scaffold0562 (1 HSPs)
scaffold0562 (20-62)||(6527-6569)
[»] scaffold0189 (1 HSPs)
scaffold0189 (20-62)||(27894-27936)


Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 50507646 - 50508008
Alignment:
Q  1 ttaacctcatgtattttaggttacacccaaatttacttaatattttacaatagtaccaaaataaccctttcatataannnnnnnnaaaactttgatttaa 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||| |    
T  50507646 ttaaccccatgtattttaggttacacccaaatttacttaatattttacaatagtaccaaaataaccctttcatataattttttttaaaactttgatttca 50507745  T
Q  101 ttaattatcactctaaaatttcatcctctttcacccacaaacaatcgtgaatgttcaatcaatctttgtagaagattaaaagtgaatcataacatctttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  50507746 ttaattatcactctaaaatttcatcctctttcacccacaaacaatcatgaatgttcaatcaatctttgtagaagattaaaagtgaatcataacatctttc 50507845  T
Q  201 atccatacttgattgctaagtgaatttcttcttctttttcaatgatgttagagtttcaannnnnnngttattgttcaacattgatatgttatgcactgtg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||| |||    
T  50507846 atccatacttgattgctaagtgaatttcttcttctttttcaatgatgttagagtttcaatttttttgttattgttcaacattgatatgttatgcacagtg 50507945  T
Q  301 caatgacagttatttgatggtgcaacacgcaagcgttaatttacattgttgaggttaacttaa 363  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  50507946 caatgacagttatttgatggtgcaacacgcaagcgttaatttaaattgttgaggttaacttaa 50508008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 86 - 257
Target Start/End: Complemental strand, 23483312 - 23483133
Alignment:
Q  86 aaaactttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatcgtgaatgttcaatcaatctttgtagaagattaaa-agtg 184  Q
    ||||| ||||||| ||| ||| |||||||||||||||| || ||||| ||||||||||||  || ||| ||||||||||| | |||||||||||| ||||    
T  23483312 aaaaccttgatttcattcattgtcactctaaaatttcacccgctttcccccacaaacaattatggatggtcaatcaatctatatagaagattaaagagtg 23483213  T
Q  185 aatcataacatcttttatccatacttgattgc-------taagtgaatttcttcttctttttcaatgatgttagagtttc 257  Q
    ||||| |||||||||  ||||||||  |||||       ||| ||||||||||||||||||||| ||||| |||||||||    
T  23483212 aatcaaaacatctttcgtccatactctattgcatataaataattgaatttcttcttctttttcattgatgctagagtttc 23483133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 86 - 257
Target Start/End: Complemental strand, 31608374 - 31608195
Alignment:
Q  86 aaaactttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatcgtgaatgttcaatcaatctttgtagaagattaaa-agtg 184  Q
    ||||| ||||||| ||| |||||| |||||||||||||   |||||||||||  ||||||| || ||||||||||||||| | |||||||||||| | |     
T  31608374 aaaaccttgatttcattcattatcgctctaaaatttcactatctttcacccaggaacaatcatggatgttcaatcaatctctatagaagattaaagaata 31608275  T
Q  185 aatcataacatcttttatccatacttgattgc-------taagtgaatttcttcttctttttcaatgatgttagagtttc 257  Q
    ||||| | ||||||| |||||||||| |||||       |||||||||||||||||||||| |||||||| |||||||||    
T  31608274 aatcaaagcatctttcatccatactttattgcatataagtaagtgaatttcttcttcttttccaatgatgctagagtttc 31608195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 362 - 422
Target Start/End: Original strand, 50509692 - 50509752
Alignment:
Q  362 aatccaccactaacttgcgatctaatttcccaagccataacatggcctctctcttaatccc 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50509692 aatccaccactaacttgcgatctaatttcccaagccataacatggcctctctcttaatccc 50509752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 110 - 207
Target Start/End: Original strand, 18167934 - 18168031
Alignment:
Q  110 actctaaaatttcatcctctttcacccacaaacaatcgtgaatgttcaatcaatctttgtagaagattaaaagtgaatcataacatcttttatccata 207  Q
    |||||||||||||| ||||||||||||||||| |||| || ||||||||||||| | | || |||||||||||||||||| | ||||||| |||||||    
T  18167934 actctaaaatttcaccctctttcacccacaaagaatcatggatgttcaatcaatttatataaaagattaaaagtgaatcaaagcatctttcatccata 18168031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 256
Target Start/End: Original strand, 24989750 - 24989896
Alignment:
Q  114 taaaatttcatcctctttcacccacaaacaatcgtgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccatacttg- 211  Q
    ||||||||||||| ||||||| ||| ||||||| |  ||||||||||||||| | |||||||||||| ||| ||||| | ||||||| | | |||||||     
T  24989750 taaaatttcatccactttcactcacgaacaatcatagatgttcaatcaatctctatagaagattaaagagttaatcaaagcatctttcaacgatacttgc 24989849  T
Q  212 --attgctaagtgaatttcttcttctttttcaatgatgttagagttt 256  Q
      ||   ||||| ||||||||||||||||||||||||| | ||||||    
T  24989850 atatatgtaagtaaatttcttcttctttttcaatgatgctggagttt 24989896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 138 - 243
Target Start/End: Complemental strand, 41589509 - 41589409
Alignment:
Q  138 caaacaatcgtgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccatacttgattgctaagtgaatttcttcttctt 236  Q
    ||||||||| ||| |||||||||||||| | | |||||||||| ||||||||| ||||||||| ||||||||| || |||     |||||||||||||||    
T  41589509 caaacaatcctga-tgttcaatcaatctctatggaagattaaagagtgaatcaaaacatctttcatccatactcgactgc-----gaatttcttcttctt 41589416  T
Q  237 tttcaat 243  Q
    |||||||    
T  41589415 tttcaat 41589409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 33393209 - 33393118
Alignment:
Q  151 atgttcaatcaatctttgt---agaagattaaa-agtgaatcataacatcttttatccatacttgattgctaagtgaatttcttcttctttttcaat 243  Q
    ||||||||||||||| |||   ||||||||||| ||||||||| ||||| ||| ||||||||| ||||||     ||||||||||||||||||||||    
T  33393209 atgttcaatcaatctctgttatagaagattaaagagtgaatcaaaacatttttcatccatactcgattgc-----gaatttcttcttctttttcaat 33393118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 47097654 - 47097720
Alignment:
Q  151 atgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccatacttgattgc 216  Q
    ||||||||||||||||| | |||||||||| | ||||||| |||| |||| ||||||||||||||||    
T  47097654 atgttcaatcaatctttatggaagattaaagaatgaatcaaaacacctttcatccatacttgattgc 47097720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 5218975 - 5219017
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  5218975 gttacacccaaatttatttaaaattttacaataataccaaaat 5219017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 10049242 - 10049200
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  10049242 gttacacccaaatttatttaaaattttacaataataccaaaat 10049200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 10471481 - 10471439
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  10471481 gttacacccaaatttatttaaaattttacaataataccaaaat 10471439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 13286932 - 13286974
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  13286932 gttacacccaaatttatttaaaattttacaataataccaaaat 13286974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 24348805 - 24348847
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  24348805 gttacacccaaatttatttaaaattttacaataataccaaaat 24348847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 26229374 - 26229416
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  26229374 gttacacccaaatttatttaaaattttacaataataccaaaat 26229416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 28555294 - 28555252
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  28555294 gttacacccaaatttatttaaaattttacaataataccaaaat 28555252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 35846749 - 35846791
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  35846749 gttacacccaaatttatttaaaattttacaataataccaaaat 35846791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 37126758 - 37126716
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  37126758 gttacacccaaatttatttaaaattttacaataataccaaaat 37126716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 47697770 - 47697812
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  47697770 gttacacccaaatttatttaaaattttacaataataccaaaat 47697812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 48458388 - 48458430
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  48458388 gttacacccaaatttatttaaaattttacaataataccaaaat 48458430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 51167304 - 51167262
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  51167304 gttacacccaaatttatttaaaattttacaataataccaaaat 51167262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 51754425 - 51754467
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  51754425 gttacacccaaatttatttaaaattttacaataataccaaaat 51754467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 9116531 - 9116495
Alignment:
Q  21 ttacacccaaatttacttaatattttacaatagtacc 57  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  9116531 ttacacccaaatttacttaaaattttacaataatacc 9116495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 15506634 - 15506388
Alignment:
Q  19 ggttacacccaaatttacttaatattttacaatagtaccaaaataaccctttcatataannnnnnnnaaaactttgatttaattaattatcactctaaaa 118  Q
    |||||||||||||||||||||| |||||| |||| ||| |||||  |||||| ||||||        ||||| ||||||| ||| ||| |||||||||||    
T  15506634 ggttacacccaaatttacttaaaattttataataatacaaaaattgcccttttatataaattttcttaaaacattgatttcattcattgtcactctaaaa 15506535  T
Q  119 tttca-tcctctttcacccacaaacaatcgtgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccatacttgattgc 216  Q
    ||||| |||| |||||||||||||||||| | |||||||  ||||||||| |||||||||||| ||||||||| ||||||||| || ||||||  |||||    
T  15506534 tttcactcct-tttcacccacaaacaatcattaatgttcggtcaatctttatagaagattaaagagtgaatcaaaacatctttcattcatactctattgc 15506436  T
Q  217 -------taagtgaatttcttcttctttttcaatgatgttagagtttc 257  Q
           ||| ||||||||||||||||||||||||||| |||||||||    
T  15506435 atataagtaattgaatttcttcttctttttcaatgatgctagagtttc 15506388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 1537016 - 1536828
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaataaccctttcatataannnnnnnnaaaactttgatttaattaattatcactctaaaat 119  Q
    |||||||||||||||||| || ||||||||||| ||| |||    || ||| ||||||        ||||| || |||| ||| ||| || ||||||||     
T  1537016 gttacacccaaatttactaaaaattttacaataatactaaatctgcctttttatataaattttcttaaaaccttaatttcattcattgtcgctctaaaac 1536917  T
Q  120 ttcatcctctttcacccacaaacaatcgtgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccatact 209  Q
    |||| ||| ||||||||||||| |||| || |||||||||||||| |  |||||||||||| ||||||| | ||||||||| |||||||||    
T  1536916 ttcaccctatttcacccacaaa-aatcatggatgttcaatcaatc-tcatagaagattaaagagtgaattaaaacatctttcatccatact 1536828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 129 - 257
Target Start/End: Complemental strand, 7818405 - 7818269
Alignment:
Q  129 tttcacccacaaacaatcgtgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccatacttgattgc-------taag 220  Q
    |||||||||||||||||| |||||||||| ||||| | | || ||||||||| ||||||||  ||||||||| ||| |||||  | |||       |||     
T  7818405 tttcacccacaaacaatcatgaatgttcagtcaatttctataaaagattaaagagtgaatcgaaacatctttcatctatactctaatgcatataagtaat 7818306  T
Q  221 tgaatttcttcttctttttcaatgatgttagagtttc 257  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  7818305 tgaatttctccttctttttcaatgatgctagagtttc 7818269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 243
Target Start/End: Original strand, 20292593 - 20292759
Alignment:
Q  92 ttgatttaattaattatcactctaaaatttcatcctctttcaccca--------caaacaatcgtgaatgttcaatcaatctttgtagaagattaaa-ag 182  Q
    ||||||| ||| ||||||||| ||||||| ||||||||||||||||        ||||||||| || || |||||| ||||| | | |||||||||| ||    
T  20292593 ttgatttcattcattatcactataaaattccatcctctttcacccaccaaggatcaaacaatcctg-atattcaattaatctctatggaagattaaagag 20292691  T
Q  183 tgaatcataacatcttttatccatacttgattgc-------taagtgaatttcttcttctttttcaat 243  Q
    ||||||| ||||||||| || |||||| ||||||       ||||||||||| |||||||||||||||    
T  20292692 tgaatcaaaacatctttcattcatactcgattgcatataaataagtgaattttttcttctttttcaat 20292759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 37829759 - 37829699
Alignment:
Q  86 aaaactttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatc 146  Q
    |||| |||||||| ||| ||||||||||||||||||||  ||||||||||||| |||||||    
T  37829759 aaaattttgatttcattcattatcactctaaaatttcactctctttcacccaccaacaatc 37829699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 3875750 - 3875708
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  3875750 gttacacccaaatttatttaaaattttacaataataccaaaat 3875708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 17445745 - 17445703
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  17445745 gttacacccaaatttatttaaaattttacaataataccaaaat 17445703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 27767720 - 27767678
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  27767720 gttacacccaaatttatttaaaattttacaataataccaaaat 27767678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 35949587 - 35949545
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  35949587 gttacacccaaatttatttaaaattttacaataataccaaaat 35949545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 42130988 - 42131034
Alignment:
Q  110 actctaaaatttcatcctctttcacccacaaacaatcgtgaatgttc 156  Q
    |||||||||||||||| ||||||||| ||||||||||  ||||||||    
T  42130988 actctaaaatttcatcatctttcacctacaaacaatcacgaatgttc 42131034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 54202333 - 54202375
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  54202333 gttacacccaaatttatttaaaattttacaataataccaaaat 54202375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 56162476 - 56162518
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  56162476 gttacacccaaatttatttaaaattttacaataataccaaaat 56162518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 36309087 - 36309046
Alignment:
Q  21 ttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    ||||||||||||||| |||| ||||||||||| |||||||||    
T  36309087 ttacacccaaatttatttaaaattttacaataataccaaaat 36309046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 50621666 - 50621707
Alignment:
Q  21 ttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    ||||||||||||||| |||| ||||||||||| |||||||||    
T  50621666 ttacacccaaatttatttaaaattttacaataataccaaaat 50621707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 39677790 - 39677742
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaataaccct 68  Q
    |||||||| ||||||| |||| ||||||||||| ||||||||| |||||    
T  39677790 gttacacctaaatttatttaaaattttacaataataccaaaattaccct 39677742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 105 - 363
Target Start/End: Original strand, 1848357 - 1848629
Alignment:
Q  105 ttatcactctaaaatttcatcctctttcacccacaaacaatcgtgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatc 203  Q
    |||||||| ||||| |||| ||||||||| || || |||||| || ||||||||||||| ||| |||||||||||| |||| |||| ||||| ||| |||    
T  1848357 ttatcactttaaaacttcaccctctttcatccgcagacaatcatggatgttcaatcaatatttatagaagattaaagagtggatcaaaacatatttcatc 1848456  T
Q  204 catacttgattgc-------taagtgaatttcttcttctttttcaatgatgttagagtttcaannnnnnngttattgttcaacattgatatgttatgcac 296  Q
    |||||||||||||       ||| ||| ||||||||||||||||||||||| ||||||||||         || ||||||||| ||||||||||| || |    
T  1848457 catacttgattgcatataagtaaatgagtttcttcttctttttcaatgatgctagagtttcattttttatcttgttgttcaacgttgatatgttacgccc 1848556  T
Q  297 tgtgcaatgacagttatttgatggtgcaacacgcaagcg------ttaatttacattgttgaggttaacttaa 363  Q
    | | ||| ||| |||||||||||||||||||| || |||      ||||||||||| ||||||||||||||||    
T  1848557 tttacaacgacggttatttgatggtgcaacacacatgcgttaacattaatttacatcgttgaggttaacttaa 1848629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 328
Target Start/End: Complemental strand, 32911245 - 32910916
Alignment:
Q  8 catgtattttaggttacacccaaatttacttaatattttacaatagtaccaaaataaccctttcatataannnnnnnnaaaactttgatttaattaatta 107  Q
    |||||||||  |||||||| ||||||||||||| |||||||||||  |||| |||  | |||| ||||||        |||  |||||||| ||| |||     
T  32911245 catgtatttatggttacacacaaatttacttaagattttacaataacaccataattgctcttttatataaattttcttaaacatttgattttattcattg 32911146  T
Q  108 tcactctaaaatttcatcctctttcacccacaaacaatcgtgaatgttcaatcaatctttgtagaagattaaaag---tgaatcataacatcttttatcc 204  Q
    | |  |||||||||||| |||||||| ||| |||||||| |  |||||||||||||||    | || |||||||    ||||||| ||||||||| || |    
T  32911145 ttatgctaaaatttcattctctttcatccaaaaacaatcatcgatgttcaatcaatctcgacaaaaaattaaaaaaaatgaatcaaaacatctttcattc 32911046  T
Q  205 atacttgattgc-------taagtgaatttcttcttctttttcaatgatgttagagtttcaannnnnnngttattgttcaacattgatatgttatgcact 297  Q
    |||||  |||||       |||||||||||||||||  | |||||||||||| ||||||| |        || ||||||||||||||||||||||| |||    
T  32911045 atactctattgcatataagtaagtgaatttcttctttatattcaatgatgtttgagtttctattttttc-ttgttgttcaacattgatatgttatgaact 32910947  T
Q  298 gtgcaatgacagttatttgatggtgcaacac 328  Q
     | | ||||| ||||||||||||||||||||    
T  32910946 ctacgatgacggttatttgatggtgcaacac 32910916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 95 - 243
Target Start/End: Complemental strand, 39713406 - 39713255
Alignment:
Q  95 atttaattaattatcactctaaaatttcatcctctttcacccacaaac--------aatcgtgaatgttcaatcaatctttgtagaagattaaa-agtga 185  Q
    |||| ||||||| ||||||||||||||||  |||||||||||||||||        |||| ||| ||||||||||||   | | |||||||||| |||||    
T  39713406 atttcattaattgtcactctaaaatttcaatctctttcacccacaaacgatcaaacaatcatga-tgttcaatcaattcctatggaagattaaagagtga 39713308  T
Q  186 atcataacatcttttatccatacttgattgctaagtgaatttcttcttctttttcaat 243  Q
    |||| ||||||||| ||||||||| ||||||     ||||||||||||||||||||||    
T  39713307 atcaaaacatctttcatccatactcgattgc-----gaatttcttcttctttttcaat 39713255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 209
Target Start/End: Original strand, 35979310 - 35979490
Alignment:
Q  29 aaatttacttaatattttacaatagtaccaaaataaccctttcatataannnnnnnnaaaactttgatttaattaattatcactctaaaatttcatcctc 128  Q
    |||||||||||| ||||||||||| ||| ||||| |  |||| ||||||        ||||| ||||||| ||| ||| |  ||||||||||||| |||     
T  35979310 aaatttacttaa-attttacaataatactaaaattattcttttatataaatttttttaaaaccttgatttcattcattgttgctctaaaatttcaccctt 35979408  T
Q  129 tttcacccacaaacaatcgtgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccatact 209  Q
    || |||||||||| |||| || ||||||||||||||| |  | ||||||||| | ||||||| || |||||| |||||||||    
T  35979409 ttacacccacaaataatcatggatgttcaatcaatctctaaaaaagattaaagactgaatcaaaatatctttcatccatact 35979490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 243
Target Start/End: Complemental strand, 4006591 - 4006425
Alignment:
Q  92 ttgatttaattaattatcactctaaaatttcatcctctttcaccca--------caaacaatcgtgaatgttcaatcaatctttgtagaagattaaa-ag 182  Q
    ||||||| ||||||| ||||||||||||||||  ||||||||||||        ||||||||| || ||||||||| |||||   | |||||||||| ||    
T  4006591 ttgatttcattaattgtcactctaaaatttcactctctttcacccaccaacgatcaaacaatcatg-atgttcaattaatctcaatggaagattaaagag 4006493  T
Q  183 tgaatcataacatcttttatccatacttgattgc-------taagtgaatttcttcttctttttcaat 243  Q
    ||||||| ||||||||| || |||||| ||||||       ||||||||||| |||||||||||||||    
T  4006492 tgaatcaaaacatctttcattcatactcgattgcatataaataagtgaattttttcttctttttcaat 4006425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 7969381 - 7969447
Alignment:
Q  151 atgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccatacttgattgc 216  Q
    ||||||||||||||| | | |||||||||| ||||||||| ||| ||||| ||||||||||||||||    
T  7969381 atgttcaatcaatctctatggaagattaaagagtgaatcaaaacttctttcatccatacttgattgc 7969447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 43576177 - 43576258
Alignment:
Q  128 ctttcacccacaaacaatcgtgaatgttcaatcaatctttgtagaagattaaaagtgaatcataacatcttttatccatact 209  Q
    |||||| |||||||||||| || |||||||| ||||||   || || | ||||||||||||| ||||||||| |||||||||    
T  43576177 ctttcatccacaaacaatcatggatgttcaaccaatctccataaaataataaaagtgaatcaaaacatctttcatccatact 43576258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 243
Target Start/End: Original strand, 44704007 - 44704173
Alignment:
Q  92 ttgatttaattaattatcactctaaaatttcatcctctttcaccca--------caaacaatcgtgaatgttcaatcaatctttgtagaagattaaa-ag 182  Q
    ||||||| ||| ||||||||||||||||||||  ||||||||||||        ||||||||| || ||||||||| ||||| | | |||||||||| ||    
T  44704007 ttgatttcattcattatcactctaaaatttcactctctttcacccaccaacgaccaaacaatcctg-atgttcaattaatctctatggaagattaaagag 44704105  T
Q  183 tgaatcataacatcttttatccatacttgattgc-------taagtgaatttcttcttctttttcaat 243  Q
     |||||| ||||||||| || |||||  ||||||       ||||||||||| |||||||||||||||    
T  44704106 cgaatcaaaacatctttcattcatacccgattgcatataaataagtgaattttttcttctttttcaat 44704173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 331
Target Start/End: Complemental strand, 44953610 - 44953554
Alignment:
Q  275 tcaacattgatatgttatgcactgtgcaatgacagttatttgatggtgcaacacgca 331  Q
    ||||| ||||||||||||| ||| | ||| ||| |||||||||||||||||||||||    
T  44953610 tcaacgttgatatgttatgaactttacaacgacggttatttgatggtgcaacacgca 44953554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 16584424 - 16584467
Alignment:
Q  19 ggttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||||||||| |||||| |||| |||||||||    
T  16584424 ggttacacccaaatttacttaaaattttataataataccaaaat 16584467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 5458262 - 5458304
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  5458262 gttacacccaaatttatttaaaattttacaataataccaaaat 5458304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 8352382 - 8352424
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  8352382 gttacacccaaatttatttaaaattttacaataataccaaaat 8352424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 20818957 - 20818999
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  20818957 gttacacccaaatttatttaaaattttacaataataccaaaat 20818999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 25487346 - 25487304
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  25487346 gttacacccaaatttatttaaaattttacaataataccaaaat 25487304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 27719244 - 27719286
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  27719244 gttacacccaaatttatttaaaattttacaataataccaaaat 27719286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 29997496 - 29997538
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  29997496 gttacacccaaatttatttaaaattttacaataataccaaaat 29997538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 31097517 - 31097559
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  31097517 gttacacccaaatttatttaaaattttacaataataccaaaat 31097559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 33411047 - 33411089
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  33411047 gttacacccaaatttatttaaaattttacaataataccaaaat 33411089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 35393643 - 35393601
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  35393643 gttacacccaaatttatttaaaattttacaataataccaaaat 35393601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 36781654 - 36781696
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  36781654 gttacacccaaatttatttaaaattttacaataataccaaaat 36781696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 38098906 - 38098864
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  38098906 gttacacccaaatttatttaaaattttacaataataccaaaat 38098864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 216
Target Start/End: Original strand, 38167778 - 38167916
Alignment:
Q  86 aaaactttgatttaattaattatcactctaaaatttcatcctctttcaccca--------caaacaatcgtgaatgttcaatcaatctttgtagaagatt 177  Q
    |||| |||||||| ||| ||| ||||||||||||||||  ||||||||||||        ||||||||| || ||||||||| ||||| | | |||||||    
T  38167778 aaaaatttgatttcattcattgtcactctaaaatttcactctctttcacccaccaacgatcaaacaatcctg-atgttcaattaatctctatggaagatt 38167876  T
Q  178 aaa-agtgaatcataacatcttttatccatacttgattgc 216  Q
    ||| ||| ||||| ||||||||| || |||||| ||||||    
T  38167877 aaagagtcaatcaaaacatctttcattcatactcgattgc 38167916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 45084247 - 45084289
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  45084247 gttacacccaaatttatttaaaattttacaataataccaaaat 45084289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 30655004 - 30655045
Alignment:
Q  21 ttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    ||||||||||||||| |||| ||||||||||| |||||||||    
T  30655004 ttacacccaaatttatttaaaattttacaataataccaaaat 30655045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 331
Target Start/End: Original strand, 35979556 - 35979616
Alignment:
Q  271 ttgttcaacattgatatgttatgcactgtgcaatgacagttatttgatggtgcaacacgca 331  Q
    ||||||||| ||||||||||||| ||| | |||| |  | |||||||||||||||||||||    
T  35979556 ttgttcaacgttgatatgttatgaactctacaatcaaggctatttgatggtgcaacacgca 35979616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 6 - 257
Target Start/End: Original strand, 41469419 - 41469679
Alignment:
Q  6 ctcatgtattttaggttacacccaaatttacttaatattttacaatagtaccaaaataaccctttcatataannnnnnnnaaaactttgatttaattaat 105  Q
    |||||||||||| ||||||||| ||||| |||||| | | ||| ||| || ||||||   ||||| ||||||        ||||||||||||| ||| ||    
T  41469419 ctcatgtatttttggttacacctaaattaacttaaaagtatacgataatatcaaaattgtccttttatataaattttcttaaaactttgatttcattcat 41469518  T
Q  106 tatcactctaaaatttcatcctctttcacccacaaacaatcgtgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatcc 204  Q
    | | |||||||||||| | ||||||||||  |||||||||  |||||||||||||||||| | ||||||||||||  |||||||| ||||||||| ||||    
T  41469519 tgttactctaaaattttaccctctttcacatacaaacaattatgaatgttcaatcaatctctatagaagattaaagggtgaatcaaaacatctttcatcc 41469618  T
Q  205 atacttgattgc-------taagtgaatttcttcttctttttc-aatgatgttagagtttc 257  Q
    ||| | | ||||       |||||||||||||||||||||||| ||||||| |||||||||    
T  41469619 atattcggttgcatataaataagtgaatttcttcttctttttcaaatgatgctagagtttc 41469679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 95 - 180
Target Start/End: Complemental strand, 40524908 - 40524823
Alignment:
Q  95 atttaattaattatcactctaaaatttcatcctctttcacccacaaacaatcgtgaatgttcaatcaatctttgtagaagattaaa 180  Q
    ||||| || |||||| ||||||||||||| | | |||||||||||||||||| || ||||||||||||||| ||||||||||||||    
T  40524908 atttatttcattatcgctctaaaatttcaccatttttcacccacaaacaatcatggatgttcaatcaatctctgtagaagattaaa 40524823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 112 - 317
Target Start/End: Original strand, 34012732 - 34012941
Alignment:
Q  112 tctaaaatttcatcctctttcacccacaaacaatcgtgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccatactt 210  Q
    ||||||||||||||| ||| ||||||||||||||| |  ||||||||||||||| | || ||||||||| ||||||||| ||||||||  ||||||| |     
T  34012732 tctaaaatttcatccgcttacacccacaaacaatcatagatgttcaatcaatctctataaaagattaaagagtgaatcaaaacatcttccatccatattc 34012831  T
Q  211 gattgc---taagtgaatttcttcttctttttcaatgatgttagagtttcaannnnnnngttattgttcaacattgatatgttatgcactgtgcaatgac 307  Q
     |||||   |||||   ||| ||  | | ||||||||||||||||||||| |        || ||||||||| ||||||||||||| ||| | ||| |||    
T  34012832 tattgcatataagtacgtttttttctttctttcaatgatgttagagtttctatttttttcttgttgttcaacgttgatatgttatgaactctacaacgac 34012931  T
Q  308 agttatttga 317  Q
    ||||||||||    
T  34012932 agttatttga 34012941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 112 - 297
Target Start/End: Original strand, 21202959 - 21203152
Alignment:
Q  112 tctaaaatttcatcctctttcacccacaaacaatcgtgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccatactt 210  Q
    ||||||||||||  || |||||||||||||||||| || | ||||||||||||| | ||||| |||||| | | ||||| ||||||||| ||| |||||     
T  21202959 tctaaaatttcacactatttcacccacaaacaatcatggacgttcaatcaatctctatagaatattaaataataaatcaaaacatctttcatctatactc 21203058  T
Q  211 gattgc-------taagtgaatttcttcttctttttcaatgatgttagagtttcaannnnnnngttattgttcaacattgatatgttatgcact 297  Q
     |||||       ||| |||||||||| ||||||||||||||||  |||||||| |        || ||||||||| |||||||||||||||||    
T  21203059 tattgcatataagtaattgaatttcttattctttttcaatgatgcaagagtttctattttattcttgttgttcaacgttgatatgttatgcact 21203152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 189
Target Start/End: Complemental strand, 37545052 - 37544872
Alignment:
Q  9 atgtattttaggttacacccaaatttacttaatattttacaatagtaccaaaataaccctttcatataannnnnnnnaaaactttgatttaattaattat 108  Q
    |||||||||  ||||||||||| ||||||||| |||| |||||| || ||||||   ||||| ||||||         |||||| ||||| ||| ||| |    
T  37545052 atgtattttttgttacacccaattttacttaaaatttaacaataatatcaaaattgtccttttatataaattttcttcaaactt-gatttcattcattgt 37544954  T
Q  109 cactctaaaatttcatcctctttcacccacaaacaatcgtgaatgttcaatcaatctttgtagaagattaaa-agtgaatca 189  Q
     |||||||||||||| ||||||||||||| |||||||  || ||||||||||||||  | || ||||||||| |||||||||    
T  37544953 tactctaaaatttcaccctctttcacccataaacaattatggatgttcaatcaatcactataaaagattaaagagtgaatca 37544872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 331
Target Start/End: Complemental strand, 37544851 - 37544791
Alignment:
Q  271 ttgttcaacattgatatgttatgcactgtgcaatgacagttatttgatggtgcaacacgca 331  Q
    ||||||||| ||||||||||||| ||| | ||| ||| |||||||||||||||| ||||||    
T  37544851 ttgttcaacgttgatatgttatgaactctacaacgacggttatttgatggtgcagcacgca 37544791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 3112204 - 3112162
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  3112204 gttacacccaaatttatttaaaattttacaataataccaaaat 3112162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 9741355 - 9741313
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  9741355 gttacacccaaatttatttaaaattttacaataataccaaaat 9741313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 12848443 - 12848501
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaataaccct-ttcatataa 77  Q
    |||||||| ||||||| |||| ||||||||||| ||||||||| ||||| |||||||||    
T  12848443 gttacacctaaatttatttaaaattttacaataataccaaaattaccctcttcatataa 12848501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 18676885 - 18676843
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  18676885 gttacacccaaatttatttaaaattttacaataataccaaaat 18676843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 31588047 - 31588005
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  31588047 gttacacccaaatttatttaaaattttacaataataccaaaat 31588005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 42697409 - 42697451
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  42697409 gttacacccaaatttatttaaaattttacaataataccaaaat 42697451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 44508506 - 44508548
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  44508506 gttacacccaaatttatttaaaattttacaataataccaaaat 44508548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 47455053 - 47455095
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  47455053 gttacacccaaatttatttaaaattttacaataataccaaaat 47455095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 12726347 - 12726299
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaataaccct 68  Q
    ||||||||| |||||| |||| ||||||||||| ||||||||| |||||    
T  12726347 gttacacccgaatttatttaaaattttacaataataccaaaattaccct 12726299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 4 - 216
Target Start/End: Complemental strand, 35006524 - 35006313
Alignment:
Q  4 acctcatgtattttaggttacacccaaatttacttaatattttacaatagtaccaaaataaccctttcatataannnnnnnnaaaactttgatttaatta 103  Q
    |||||||||||||| ||||||||| |||||||||||| | ||||||||| || ||||||  ||||||  |||||        ||||| || |||| |||     
T  35006524 acctcatgtattttcggttacacctaaatttacttaaaagtttacaataatatcaaaattgcccttt--tataaaaaatgtcaaaaccttaatttcattc 35006427  T
Q  104 attatcactctaaaatttcatcctctttcacccacaaacaatcgtgaatgttcaatcaatctttgtagaagatt-aaaagtgaatcataacatcttttat 202  Q
    ||| |||||||||||||||| | ||||||| |||||||||||| || ||||||||||||||| | ||||||||| || ||||||||| ||||||||| ||    
T  35006426 attgtcactctaaaatttcaccatctttcatccacaaacaatcatggatgttcaatcaatctctatagaagattgaagagtgaatcaaaacatctttcat 35006327  T
Q  203 ccatacttgattgc 216  Q
    | ||| | ||||||    
T  35006326 ctatattcgattgc 35006313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 216
Target Start/End: Original strand, 31639864 - 31639942
Alignment:
Q  138 caaacaatcgtgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccatacttgattgc 216  Q
    ||||||||| ||| |||||||||||||| | | |||||||||| ||||||||| ||||||||| ||||||||| ||||||    
T  31639864 caaacaatcctga-tgttcaatcaatctctatggaagattaaagagtgaatcaaaacatctttcatccatactcgattgc 31639942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 11124457 - 11124415
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  11124457 gttacacccaaatttatttaaaattttacaataataccaaaat 11124415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 16312899 - 16312945
Alignment:
Q  92 ttgatttaattaattatcactctaaaatttcatcctctttcacccac 138  Q
    ||||||| ||| ||| ||||||||||||||||| |||||||||||||    
T  16312899 ttgatttcattcattgtcactctaaaatttcattctctttcacccac 16312945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 17977871 - 17977829
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  17977871 gttacacccaaatttatttaaaattttacaataataccaaaat 17977829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 19390695 - 19390653
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  19390695 gttacacccaaatttatttaaaattttacaataataccaaaat 19390653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 20115064 - 20115106
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  20115064 gttacacccaaatttatttaaaattttacaataataccaaaat 20115106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 21867107 - 21867065
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  21867107 gttacacccaaatttatttaaaattttacaataataccaaaat 21867065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 30787267 - 30787225
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  30787267 gttacacccaaatttatttaaaattttacaataataccaaaat 30787225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 243
Target Start/End: Original strand, 40658629 - 40658729
Alignment:
Q  138 caaacaatcgtgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccatacttgattgctaagtgaatttcttcttctt 236  Q
    ||||||||| ||| |||||||||||||| | | |||||||||| ||||||||| || |||||| |||||||||  | |||     |||||||||||||||    
T  40658629 caaacaatcctga-tgttcaatcaatctctatggaagattaaagagtgaatcaaaatatctttcatccatactcaactgc-----gaatttcttcttctt 40658722  T
Q  237 tttcaat 243  Q
    |||||||    
T  40658723 tttcaat 40658729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 363
Target Start/End: Complemental strand, 35006225 - 35006196
Alignment:
Q  334 cgttaatttacattgttgaggttaacttaa 363  Q
    ||||||||||||||||||||||||||||||    
T  35006225 cgttaatttacattgttgaggttaacttaa 35006196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 39430382 - 39430341
Alignment:
Q  21 ttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    ||||||||||||||| |||| ||||||||||| |||||||||    
T  39430382 ttacacccaaatttatttaaaattttacaataataccaaaat 39430341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 110 - 258
Target Start/End: Complemental strand, 17315020 - 17314864
Alignment:
Q  110 actctaaaatttcatcctctttcacccacaaacaatcgtgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccatac 208  Q
    ||||||||||||||  |||||||| |||||||||||| |||||||||||||||||||| || | ||||||| ||||||||| ||||| ||| ||||||||    
T  17315020 actctaaaatttcactctctttcagccacaaacaatcatgaatgttcaatcaatctttataaaggattaaagagtgaatcaaaacatatttcatccatac 17314921  T
Q  209 ttgattgc-------taagtgaatttcttcttctttttcaatgatgttagagtttca 258  Q
    |  |||||       ||| |||||||||||||||||||||||||||  |||||||||    
T  17314920 tctattgcatataagtaactgaatttcttcttctttttcaatgatgcaagagtttca 17314864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 108 - 216
Target Start/End: Original strand, 6675217 - 6675324
Alignment:
Q  108 tcactctaaaatttcatcctctttcacccacaaacaatcgtgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccat 206  Q
    |||||||||||||| |  |||||||||| ||||| |||| || ||||||||||||||| | |||||||||||| ||||||||| ||||||||| ||||||    
T  6675217 tcactctaaaatttta--ctctttcaccaacaaataatcatggatgttcaatcaatctctatagaagattaaagagtgaatcaaaacatctttcatccat 6675314  T
Q  207 acttgattgc 216  Q
    ||| ||||||    
T  6675315 actcgattgc 6675324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 29880728 - 29880859
Alignment:
Q  92 ttgatttaattaattatcactctaaaatttcatcctctttcaccca--------caaacaatcgtgaatgttcaatcaatctttgtagaagattaaa-ag 182  Q
    ||||||| ||||||| ||||||||||||| ||| ||||||||||||        ||||||||| ||| |||||||| ||||||| | |||||||||| ||    
T  29880728 ttgatttcattaattgtcactctaaaattccattctctttcacccatcaacgatcaaacaatcctga-tgttcaattaatctttatggaagattaaagag 29880826  T
Q  183 tgaatcataacatcttttatccatacttgattg 215  Q
    ||||||| |||||||||||| |||||| |||||    
T  29880827 tgaatcaaaacatcttttattcatactcgattg 29880859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 112 - 199
Target Start/End: Original strand, 26947181 - 26947268
Alignment:
Q  112 tctaaaatttcatcctctttcacccacaaacaatcgtgaatgttcaatcaatctttgtagaagatt-aaaagtgaatcataacatcttt 199  Q
    ||||||||||||  ||||||||||||||||||||| || || |||||||||||| | ||||||||| || ||||||||| |||||||||    
T  26947181 tctaaaatttcactctctttcacccacaaacaatcatggat-ttcaatcaatctctatagaagattgaagagtgaatcaaaacatcttt 26947268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 111 - 165
Target Start/End: Original strand, 26181103 - 26181157
Alignment:
Q  111 ctctaaaatttcatcctctttcacccacaaacaatcgtgaatgttcaatcaatct 165  Q
    ||||||| |||||  ||||||||||||||||||||| ||||||||||||||||||    
T  26181103 ctctaaactttcactctctttcacccacaaacaatcatgaatgttcaatcaatct 26181157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 14253136 - 14253201
Alignment:
Q  125 cctctttcacccacaaacaatcgtgaatgttcaatcaatctttgtagaagattaaa-agtgaatca 189  Q
    |||||||||||||||||||||| || ||||||||||||||| | || ||||||||| |||||||||    
T  14253136 cctctttcacccacaaacaatcatggatgttcaatcaatctctataaaagattaaagagtgaatca 14253201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 247
Target Start/End: Complemental strand, 7082225 - 7082108
Alignment:
Q  138 caaacaatcgtgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccatacttgattgc-------taagtgaatttct 229  Q
    ||||||||| |  |||||||||||||||   | |||||||||| ||||||||| || |||| | ||||| ||| ||||||       |||||||||||||    
T  7082225 caaacaatcatccatgttcaatcaatctacatggaagattaaagagtgaatcaaaatatctctcatccaaactcgattgcatataagtaagtgaatttct 7082126  T
Q  230 tcttctttttcaatgatg 247  Q
    ||||||||||||||||||    
T  7082125 tcttctttttcaatgatg 7082108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 4169667 - 4169709
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  4169667 gttacacccaaatttatttaaaattttacaataataccaaaat 4169709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 4210396 - 4210438
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  4210396 gttacacccaaatttatttaaaattttacaataataccaaaat 4210438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 5545374 - 5545416
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  5545374 gttacacccaaatttatttaaaattttacaataataccaaaat 5545416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 8658990 - 8659032
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  8658990 gttacacccaaatttatttaaaattttacaataataccaaaat 8659032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 247
Target Start/End: Original strand, 8810218 - 8810248
Alignment:
Q  217 taagtgaatttcttcttctttttcaatgatg 247  Q
    |||||||||||||||||||||||||||||||    
T  8810218 taagtgaatttcttcttctttttcaatgatg 8810248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 11590249 - 11590291
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  11590249 gttacacccaaatttatttaaaattttacaataataccaaaat 11590291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 17595993 - 17595951
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  17595993 gttacacccaaatttatttaaaattttacaataataccaaaat 17595951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 25144204 - 25144162
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    ||||||| ||||||||||||| ||||||||||| |||||||||    
T  25144204 gttacactcaaatttacttaaaattttacaataataccaaaat 25144162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 146
Target Start/End: Original strand, 32173000 - 32173054
Alignment:
Q  92 ttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatc 146  Q
    ||||||| ||| ||| ||||||||||||||||  |||||||||||| ||||||||    
T  32173000 ttgatttcattcattgtcactctaaaatttcactctctttcacccagaaacaatc 32173054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 32938530 - 32938488
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  32938530 gttacacccaaatttatttaaaattttacaataataccaaaat 32938488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 33489795 - 33489837
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  33489795 gttacacccaaatttatttaaaattttacaataataccaaaat 33489837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 742982 - 742938
Alignment:
Q  18 aggttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    ||||||||| |||||||| |||| ||||||||||| |||||||||    
T  742982 aggttacactcaaatttatttaaaattttacaataataccaaaat 742938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 13889191 - 13889151
Alignment:
Q  22 tacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||| |||||||||||| ||||||||||| |||||||||    
T  13889191 tacacctaaatttacttaaaattttacaataataccaaaat 13889151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 45926300 - 45926102
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaataaccctttcatataannnnnnnnaaaactttgatttaatta-attatcactctaaaa 118  Q
    |||||||| |||||||||||| | ||||||||| ||||||||| ||||||| ||| ||        ||||| || |||| |||  ||| ||||||| |||    
T  45926300 gttacacctaaatttacttaaaagtttacaataataccaaaattacccttttataaaaaaaatcttaaaaccttaatttcatttcattgtcactctcaaa 45926201  T
Q  119 tttcatcctctttcacccacaaacaatcgtgaatgttcaatcaatctttgtagaagatt-aaaagtgaatcataacatcttttatccatacttgattgc 216  Q
    || || |||||||||||| ||||||||| || ||||||||||||||| | ||||||||| || ||||||||| ||||||||| ||||||||| ||||||    
T  45926200 ttgcaccctctttcacccgcaaacaatcatgtatgttcaatcaatctctatagaagattgaagagtgaatcaaaacatctttcatccatactcgattgc 45926102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 109 - 189
Target Start/End: Complemental strand, 9263576 - 9263495
Alignment:
Q  109 cactctaaaatttcatcctctttcacccacaaacaatcgtgaatgttcaatcaatctttgtagaagattaaa-agtgaatca 189  Q
    ||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||| | ||||| |||||| |||||||||    
T  9263576 cactctaaaatttcatcatctttcatccacaaacaatcatgaatgttcaatcaatctctatagaatattaaagagtgaatca 9263495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 138 - 243
Target Start/End: Original strand, 24527073 - 24527173
Alignment:
Q  138 caaacaatcgtgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccatacttgattgctaagtgaatttcttcttctt 236  Q
    ||||||||| ||| |||||||||||||||| | |||||||||| ||||||| | ||||||||| ||||||||| || |||     |||||||||||||||    
T  24527073 caaacaatcctga-tgttcaatcaatctttatggaagattaaagagtgaattaaaacatctttcatccatactcgactgc-----gaatttcttcttctt 24527166  T
Q  237 tttcaat 243  Q
    |||||||    
T  24527167 tttcaat 24527173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 51547072 - 51547138
Alignment:
Q  114 taaaatttcatcctctttcacccacaaacaatcgtgaatgttcaatcaatctttgtagaagattaaa 180  Q
    |||||||||| |||||||||||||||||||||  || |||||||||||| || | ||||||||||||    
T  51547072 taaaatttcaccctctttcacccacaaacaattatggatgttcaatcaagctatatagaagattaaa 51547138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 243
Target Start/End: Original strand, 14289555 - 14289719
Alignment:
Q  86 aaaactttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatcgtgaatgttcaatcaatctttgtagaagattaaa-agtg 184  Q
    |||| |||||||| ||| ||| ||||||||||||| ||  |||||||| |||| |||  || || ||||||||| ||||| | | |||||||||| ||||    
T  14289555 aaaattttgatttcatttattgtcactctaaaattccactctctttcatccaccaacgttcctg-atgttcaattaatctctattgaagattaaagagtg 14289653  T
Q  185 aatcataacatcttttatccatacttgattgc-------taagtgaatttcttcttctttttcaat 243  Q
     |||| ||||||||| || |||||| ||||||       ||||||||||| |||||||||||||||    
T  14289654 gatcaaaacatctttcattcatactcgattgcatataaataagtgaattttttcttctttttcaat 14289719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 243
Target Start/End: Original strand, 32117385 - 32117497
Alignment:
Q  138 caaacaatcgtgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccatacttgattgc-------taagtgaatttct 229  Q
    ||||||||| ||| |||||||| ||||| | | |||||||||| ||||||||| ||||||||| || |||||||||||||       ||||||||||| |    
T  32117385 caaacaatcctga-tgttcaattaatctctatggaagattaaagagtgaatcaaaacatctttcattcatacttgattgcatataaataagtgaattttt 32117483  T
Q  230 tcttctttttcaat 243  Q
    ||||||||||||||    
T  32117484 tcttctttttcaat 32117497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 1702630 - 1702570
Alignment:
Q  86 aaaactttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatc 146  Q
    |||| |||||||| ||| ||| ||||||||||||||||  ||||||||||||| |||||||    
T  1702630 aaaattttgatttcatttattgtcactctaaaatttcactctctttcacccaccaacaatc 1702570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 216
Target Start/End: Complemental strand, 45942200 - 45942122
Alignment:
Q  138 caaacaatcgtgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccatacttgattgc 216  Q
    ||||||||| ||| |||||||| ||||| | |||||||||||| ||||||||| ||||||||| || |||||| ||||||    
T  45942200 caaacaatcctga-tgttcaattaatctatatagaagattaaagagtgaatcaaaacatctttaattcatactcgattgc 45942122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 3486435 - 3486344
Alignment:
Q  151 atgttcaatcaatctttgta---gaagattaaa-agtgaatcataacatcttttatccatacttgattgctaagtgaatttcttcttctttttcaat 243  Q
    ||||||||||||||| |||    |||||||||| ||||||||| ||||| ||| ||||||||| ||||||     ||||||||||||||||||||||    
T  3486435 atgttcaatcaatctctgttacggaagattaaagagtgaatcaaaacatttttcatccatactcgattgc-----gaatttcttcttctttttcaat 3486344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 11335712 - 11335670
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  11335712 gttacacccaaatttatttaaaattttacaataataccaaaat 11335670  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 11493732 - 11493690
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  11493732 gttacacccaaatttatttaaaattttacaataataccaaaat 11493690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 13556078 - 13556120
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  13556078 gttacacccaaatttatttaaaattttacaataataccaaaat 13556120  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 17926314 - 17926272
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  17926314 gttacacccaaatttatttaaaattttacaataataccaaaat 17926272  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 25730044 - 25730002
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  25730044 gttacacccaaatttatttaaaattttacaataataccaaaat 25730002  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 25828678 - 25828720
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  25828678 gttacacccaaatttatttaaaattttacaataataccaaaat 25828720  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 26770249 - 26770207
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  26770249 gttacacccaaatttatttaaaattttacaataataccaaaat 26770207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 37094276 - 37094234
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  37094276 gttacacccaaatttatttaaaattttacaataataccaaaat 37094234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 40359668 - 40359710
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  40359668 gttacacccaaatttatttaaaattttacaataataccaaaat 40359710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 48542676 - 48542634
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  48542676 gttacacccaaatttatttaaaattttacaataataccaaaat 48542634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 50490804 - 50490846
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  50490804 gttacacccaaatttatttaaaattttacaataataccaaaat 50490846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 52469557 - 52469515
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  52469557 gttacacccaaatttatttaaaattttacaataataccaaaat 52469515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 3994993 - 3994953
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaa 60  Q
    |||||||||||||||| |||| ||||||||||| |||||||    
T  3994993 gttacacccaaatttatttaaaattttacaataataccaaa 3994953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 86 - 257
Target Start/End: Original strand, 3802 - 3981
Alignment:
Q  86 aaaactttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatcgtgaatgttcaatcaatctttgtagaagatt-aaaagtg 184  Q
    ||||| ||||||| ||| ||| |||||||||||||||| || |||||| || ||||||||  || ||| ||||||||||| | ||||||||| |||||||    
T  3802 aaaaccttgatttcattcattgtcactctaaaatttcacccgctttcatccgcaaacaattatggatggtcaatcaatctctatagaagattaaaaagtg 3901  T
Q  185 aatcataacatcttttatccatacttgattgc-------taagtgaatttcttcttctttttcaatgatgttagagtttc 257  Q
    ||||| || ||||||  ||||||||  |||||       ||| ||||||||||||||||||||| |||||  ||||||||    
T  3902 aatcaaaatatctttcgtccatactctattgcatataaataattgaatttcttcttctttttcattgatgcaagagtttc 3981  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 86 - 178
Target Start/End: Complemental strand, 6733480 - 6733389
Alignment:
Q  86 aaaactttgatttaattaattatcactctaaaatttcatcctctttcacccacaaacaatcgtgaatgttcaatcaatctttgtagaagatta 178  Q
    ||||| ||||||| ||| ||| |||||||||||||||| | ||||||||||||||| |||  |||||||||||||||||| | ||||||||||    
T  6733480 aaaaccttgatttcattcattgtcactctaaaatttca-catctttcacccacaaataattatgaatgttcaatcaatctctatagaagatta 6733389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 216
Target Start/End: Complemental strand, 18522807 - 18522729
Alignment:
Q  138 caaacaatcgtgaatgttcaatcaatctttgtagaagattaaa-agtgaatcataacatcttttatccatacttgattgc 216  Q
    ||||||||| ||| |||||||| ||||| | | |||||||||| ||||||||| ||||||||| || |||||||||||||    
T  18522807 caaacaatcctga-tgttcaattaatctatatggaagattaaagagtgaatcaaaacatctttcattcatacttgattgc 18522729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 3390956 - 3390914
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  3390956 gttacacccaaatttatttaaaattttacaataataccaaaat 3390914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 8936011 - 8935969
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  8936011 gttacacccaaatttatttaaaattttacaataataccaaaat 8935969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 15472791 - 15472749
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  15472791 gttacacccaaatttatttaaaattttacaataataccaaaat 15472749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 33570194 - 33570152
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  33570194 gttacacccaaatttatttaaaattttacaataataccaaaat 33570152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 35066168 - 35066126
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  35066168 gttacacccaaatttatttaaaattttacaataataccaaaat 35066126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0562 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0562
Description:

Target: scaffold0562; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 6569 - 6527
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  6569 gttacacccaaatttatttaaaattttacaataataccaaaat 6527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 27936 - 27894
Alignment:
Q  20 gttacacccaaatttacttaatattttacaatagtaccaaaat 62  Q
    |||||||||||||||| |||| ||||||||||| |||||||||    
T  27936 gttacacccaaatttatttaaaattttacaataataccaaaat 27894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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