View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2851_low_14 (Length: 372)
Name: NF2851_low_14
Description: NF2851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2851_low_14 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 37 - 369
Target Start/End: Original strand, 35143220 - 35143552
Alignment:
| Q |
37 |
tagtagagaaaaccttttgagacattgcagaaaaattcttcaagcatttgaaaatttgtcctgatagattgttttctgagagatcgaacaactgaatgtt |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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|
| T |
35143220 |
tagtagagaaaaccttttgagacattgcagaaaaattattcaagcatttgaaaatttgtcctgatagattgttttctgagagatccaacaactgaacgtt |
35143319 |
T |
|
| Q |
137 |
tgtcaaggaacaaagactctgcggaaggattccagagaatcggttctttcgtaagcttaacatttgcaattgttgccctaaccaatacggtattggtcct |
236 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
35143320 |
tgtcaaggaacaaagactctgtggaaggattccagagaatcggttccttcctaagcttaacatttgcaattgtcgccctaaccaatacggtattggtcct |
35143419 |
T |
|
| Q |
237 |
gagaatttattatctccaagatctagcatgaccaggtttgtgcaatttttcaaggataaaggtaacttccctgttaagctattgtttcgtaatatcaata |
336 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||| |
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|
| T |
35143420 |
gagaatctattatctccaagatctagcatgaccaggtttgtgcaatttttcaaggataaaggtaacttcccgtttaagctattgttgcgcaatatcaata |
35143519 |
T |
|
| Q |
337 |
ccttaagatcaagtaatgatcccattgatgatg |
369 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||| |
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|
| T |
35143520 |
ccttaagttcaagcaatgatcccattgatgatg |
35143552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 37 - 369
Target Start/End: Complemental strand, 37164659 - 37164327
Alignment:
| Q |
37 |
tagtagagaaaaccttttgagacattgcagaaaaattcttcaagcatttgaaaatttgtcctgatagattgttttctgagagatcgaacaactgaatgtt |
136 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||| |||||||| |||||||| ||||| |
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|
| T |
37164659 |
tagtagagaaaacattttgagacattgcagaaaaattcttccagcatttgaaaattagtcctgaaagattgttttcagagagatccaacaactggatgtt |
37164560 |
T |
|
| Q |
137 |
tgtcaaggaacaaagactctgcggaaggattccagagaatcggttctttcgtaagcttaacatttgcaattgttgccctaaccaatacggtattggtcct |
236 |
Q |
| |
|
||| ||| |||||||| |||||||| ||||||| || |||| |||||||||||||||||| |||||||| ||||||||||| |||||||||||| |
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|
| T |
37164559 |
tgttaagtcgcaaagactaagcggaaggcttccagataactggttacctcgtaagcttaacatttgtaattgttggcctaaccaataaggtattggtcct |
37164460 |
T |
|
| Q |
237 |
gagaatttattatctccaagatctagcatgaccaggtttgtgcaatttttcaaggataaaggtaacttccctgttaagctattgtttcgtaatatcaata |
336 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||| |||| ||||||||||||||| | ||| || | |||||||||||||||||| || ||||| || | |
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|
| T |
37164459 |
gagaatctattatctccaagatctagcatgatcagttttgagcaatttttcaaggagacaggcaattaccctgttaagctattgttgcgcaatattaaca |
37164360 |
T |
|
| Q |
337 |
ccttaagatcaagtaatgatcccattgatgatg |
369 |
Q |
| |
|
||||||| | | |||||||||||||||| |||| |
|
|
| T |
37164359 |
ccttaagtttatgtaatgatcccattgaggatg |
37164327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 54 - 364
Target Start/End: Complemental strand, 38748858 - 38748550
Alignment:
| Q |
54 |
tgagacattgcagaaaaattcttcaagcatttgaaaatttgtcctgatagattgttttctgagagatcgaacaactgaatgtttgtcaaggaacaaagac |
153 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||| |||| ||| ||||||| || |||||||| | || |||||||||||| | | ||| ||| |
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|
| T |
38748858 |
tgagacattacagaaaaattcttcaagcacttgaaaattcgtcccgatggattgttctcagagagatccaccagctgaatgtttgttatgtcaca--gac |
38748761 |
T |
|
| Q |
154 |
tctgcggaaggattccagagaatcggttctttcgtaagcttaacatttgcaattgttgccctaaccaatacggtattggtcctgagaatttattatctcc |
253 |
Q |
| |
|
||||||||||| ||||| |||| ||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
38748760 |
tctgcggaaggcttccattgaattggttctttcacaagcttaacatttgtaattgttgtcctaaccaatacggtattggtcctgagaatctattatctcc |
38748661 |
T |
|
| Q |
254 |
aagatctagcatgaccaggtttgtgcaatttttcaaggataaaggtaacttccctgttaagctattgtttcgtaatatcaataccttaagatcaagtaat |
353 |
Q |
| |
|
||||||||||||| ||| | ||||||||||||||| || ||||||||||||||||| ||||||||||| || |||||||||||||||| | ||||||| |
|
|
| T |
38748660 |
aagatctagcatggtcagttctgtgcaatttttcaatgagaaaggtaacttccctgtcaagctattgttgcgcaatatcaataccttaattttaagtaat |
38748561 |
T |
|
| Q |
354 |
gatcccattga |
364 |
Q |
| |
|
||||||||||| |
|
|
| T |
38748560 |
gatcccattga |
38748550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 11 - 369
Target Start/End: Complemental strand, 37132227 - 37131869
Alignment:
| Q |
11 |
gtaaaataacacagagtgtaagattctagtagagaaaaccttttgagacattgcagaaaaattcttcaagcatttgaaaatttgtcctgatagattgttt |
110 |
Q |
| |
|
||||||||| ||||||| || | | || || ||| |||| |||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
37132227 |
gtaaaataaaacagagtctatggtgctcgttgaggaaacattttgagacattgcggaaaaattcttcaagcacttgaaaattcgtcctgatagattgttt |
37132128 |
T |
|
| Q |
111 |
tctgagagatcgaacaactgaatgtttgtcaaggaacaaagactctgcggaaggattccagagaatcggttctttcgtaagcttaacatttgcaattgtt |
210 |
Q |
| |
|
||||||||||| |||| || ||||||| || ||||||||||||||||||| ||||| ||||| | ||| ||||||||||||||||||||| ||||| |
|
|
| T |
37132127 |
tctgagagatccaacagctcaatgttttgtaaataacaaagactctgcggaagacttccatagaattgattccttcgtaagcttaacatttgcatttgtt |
37132028 |
T |
|
| Q |
211 |
gccctaaccaatacggtattggtcctgagaatttattatctccaagatctagcatgaccaggtttgtgcaatttttcaaggataaaggtaacttccctgt |
310 |
Q |
| |
|
| ||||||||||||||||||||||||| |||| ||||||| || ||||||||||||| ||||| |||||||||||||||| | ||| | |||||| |
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|
| T |
37132027 |
gtcctaaccaatacggtattggtcctgtgaatctattatcgcctagatctagcatgattgggtttttgcaatttttcaaggagacaggcagcttcccata |
37131928 |
T |
|
| Q |
311 |
taagctattgtttcgtaatatcaataccttaagatcaagtaatgatcccattgatgatg |
369 |
Q |
| |
|
|| |||||||| || |||||||||||||||| || ||||||||||||||||| |||| |
|
|
| T |
37131927 |
gaaactattgttgcgcaatatcaataccttaaattccagtaatgatcccattgaggatg |
37131869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 46 - 364
Target Start/End: Complemental strand, 37139273 - 37138955
Alignment:
| Q |
46 |
aaaccttttgagacattgcagaaaaattcttcaagcatttgaaaatttgtcctgatagattgttttctgagagatcgaacaactgaatgtttgtcaagga |
145 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||| ||||||||||||| ||| ||| |
|
|
| T |
37139273 |
aaacattttgagacattgctgaaaaattcttcaagcatttgaaaattcgtcctgaaagattgttttcggagagatccaacaactgaatgtatgttaagtc |
37139174 |
T |
|
| Q |
146 |
acaaagactctgcggaaggattccagagaatcggttctttcgtaagcttaacatttgcaattgttgccctaaccaatacggtattggtcctgagaattta |
245 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||| |||||||||||| |||||| |||||| |||| |||||| ||||||||||| || ||| || |
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|
| T |
37139173 |
acaaagactcagcggaaggcttccagagaatcggttccttcgtaagcttagcatttgtaattgtcttcctagccaatatggtattggtccagaaaatcta |
37139074 |
T |
|
| Q |
246 |
ttatctccaagatctagcatgaccaggtttgtgcaatttttcaaggataaaggtaacttccctgttaagctattgtttcgtaatatcaataccttaagat |
345 |
Q |
| |
|
|||||||| ||||||||||||| || | |||||||||||||||||| | ||| |||||||| | || || ||||| || |||||||||||| ||| | |
|
|
| T |
37139073 |
ttatctcctagatctagcatgatcatttctgtgcaatttttcaaggagagaggcaacttcccactgaacctgttgttccgcaatatcaatacccgaagtt |
37138974 |
T |
|
| Q |
346 |
caagtaatgatcccattga |
364 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
37138973 |
caagtaatgatcccattga |
37138955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 46 - 369
Target Start/End: Original strand, 3022932 - 3023255
Alignment:
| Q |
46 |
aaaccttttgagacattgcagaaaaattcttcaagcatttgaaaatttgtcctgatagattgttttctgagagatcgaacaactgaatgtttgtcaagga |
145 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||| || |||||||| |||| |||||||||||| | | |
|
|
| T |
3022932 |
aaacattttgagacattgcggaaaaattcttcaagcacttgaaaattcgtcctgatagattgttctcagagagatccaacagctgaatgtttgttatgtc |
3023031 |
T |
|
| Q |
146 |
acaaagactctgcggaaggattccagagaatcggttctttcgtaagcttaacatttgcaattgttgccctaaccaatacggtattggtcctgagaattta |
245 |
Q |
| |
|
||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||| |||||| || |
|
|
| T |
3023032 |
acaaagactctgcggaaggcttccattgaaatggttctttcgtaagcttaacatttgtaattgttgtcctagccaatacggtattggtcccgagaatcta |
3023131 |
T |
|
| Q |
246 |
ttatctccaagatctagcatgaccaggtttgtgcaatttttcaaggataaaggtaacttccctgttaagctattgtttcgtaatatcaataccttaagat |
345 |
Q |
| |
|
|||||||||||||||||||||| ||| | ||||||||||||||| || ||||||||||||||||| ||||||||||| || |||||||||||||||| | |
|
|
| T |
3023132 |
ttatctccaagatctagcatgatcagttctgtgcaatttttcaatgagaaaggtaacttccctgtcaagctattgttgcgcaatatcaataccttaattt |
3023231 |
T |
|
| Q |
346 |
caagtaatgatcccattgatgatg |
369 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
3023232 |
taagtaatgatcccattgaggatg |
3023255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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