View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2851_low_17 (Length: 332)
Name: NF2851_low_17
Description: NF2851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2851_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 12 - 316
Target Start/End: Original strand, 44649219 - 44649524
Alignment:
| Q |
12 |
atgagattaagcagaggtggcatggcatgcatgtgaaactgctgcttgtgttttcactgtcaaaaccaaaccaaccaaccaatgtcttaaatcaccataa |
111 |
Q |
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| T |
44649219 |
atgagattaagcagaggtggcatggcatgcatgtgaaactgctgcttgtgttttcactgtcaaaaccaaaccaaccaaccaatgtcttaaatcaccataa |
44649318 |
T |
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| Q |
112 |
gagaaaacatgaaacaattcctccttgggacttaccatgca-----tgctgctatatgtgtcacgtgaatatatatcatatcagtgatatcacccatttc |
206 |
Q |
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| T |
44649319 |
gagaaaacatgaaacaattcctccttgggacttaccatgcatgcattgctgctatatgtgtcacgtgaatatatatcatatcagtgatatcacccatttc |
44649418 |
T |
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| Q |
207 |
caatgtctctctctgtgatcaaaaccatcatcaccaatgcttttatctgacaagtcatgcacgcttaaaaccatctataaaaagataacctcaatttcac |
306 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44649419 |
caatg----tctctgtgatcaaaaccatcatcaccaatgcttttatctgacaagtcatgcacgcttaaaaccatctataaaaagataacctcaatttcac |
44649514 |
T |
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| Q |
307 |
tgattgtaga |
316 |
Q |
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|||||||||| |
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| T |
44649515 |
tgattgtaga |
44649524 |
T |
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