View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2851_low_19 (Length: 315)
Name: NF2851_low_19
Description: NF2851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2851_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 9146422 - 9146715
Alignment:
| Q |
1 |
aggtgagagacaaagagctttaaatccctaattcttgaatctgagttctacgaacactaaaaaagaaatcaaagagagctttttactaaaaagaaatcga |
100 |
Q |
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| T |
9146422 |
aggtgagatacaaagagatt-aaatccctaattcttgaatctgagttctacgaacactaaaaaagaaatcaaagagagctttttactaaaaagaaatcga |
9146520 |
T |
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| Q |
101 |
aggtgagagacagagaggttcaacgattttgaatgggcacaacaaaatcaaccattagnnnnnnnatatatcagattgaaaatctgtgaaataattgagg |
200 |
Q |
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| T |
9146521 |
aggtgagagacagagaggttcaacgattttgaatgggcacaacaaaatcaaccattagtttttttatatatcagattgaaaatctgtgaaataattgagg |
9146620 |
T |
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| Q |
201 |
ggaaacagtctatgaatgaacaaggaaaattaatgaattttgaggaaccagtctgtgaaataattgaaaatctatgaaataattgaggggaaaca |
295 |
Q |
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| T |
9146621 |
ggaaacagtctatgaatgaacaaggaaaatgaatgaattgagaagaagcagtctgtgaaataattgaaaatctgtgaaataattgagaggaaaca |
9146715 |
T |
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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 9146683 - 9146719
Alignment:
| Q |
175 |
attgaaaatctgtgaaataattgaggggaaacagtct |
211 |
Q |
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| T |
9146683 |
attgaaaatctgtgaaataattgagaggaaacagtct |
9146719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 5 - 293
Target Start/End: Original strand, 37915770 - 37916058
Alignment:
| Q |
5 |
gagagacaaagagctttaaatccctaattcttgaatctgagttctacgaacactaaaaaagaaatcaaagagagctttttactaaaaagaaatcgaaggt |
104 |
Q |
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| T |
37915770 |
gagagataaagaactttaaatccctaattcttgaatctgagttctacgaacactaaaaaagaaatcaaagagagctttttactaaaaagaaatcgaaggt |
37915869 |
T |
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| Q |
105 |
gagagacagagaggttcaacgattttgaatgggcacaacaaaatcaaccattagnnnnnnnatatatcagattgaaaatctgtgaaataattgaggggaa |
204 |
Q |
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| T |
37915870 |
gagagacagagaggttcatcaattttgaatgcgcacaacaaaatcaaccattagtttttttatatatcagattgaaaatctgtgaaataattgatgggaa |
37915969 |
T |
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| Q |
205 |
acagtctatgaatgaacaaggaaaattaatgaattttgaggaaccagtctgtgaaataattgaaaatctatgaaataattgaggggaaa |
293 |
Q |
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| T |
37915970 |
acagtctataaatgaacaaggaaaatgaatgaattgagaggaagcagtctgtgaaataattgaagatctgtgaaataattgagaggaaa |
37916058 |
T |
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