View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2851_low_2 (Length: 692)
Name: NF2851_low_2
Description: NF2851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2851_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 483; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 141 - 677
Target Start/End: Complemental strand, 14202899 - 14202363
Alignment:
| Q |
141 |
ttctcatcatgaccaatttatggagtagtcatattgggtgcttgaatatcatttcaaaacagttttcagcacttagaaatgtttattctcactctttgaa |
240 |
Q |
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| T |
14202899 |
ttctcatcatgaccaatttatggagtagtcatattgggtgcttgaatatcatttcaaaacagttttcagcacttagaaatgtttattctcactctttgaa |
14202800 |
T |
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| Q |
241 |
ctataaagtatttccgtagcagctaagtaatttttatagnnnnnnnnnnccttaaccatccaattctaataagggaaagggggcattaattaataatttc |
340 |
Q |
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| T |
14202799 |
ctataaagtatttccgtagcagctaagtaatttttatagttttttttttccttaaccatccaattctaataagggaaaggggacattaattaataatttc |
14202700 |
T |
|
| Q |
341 |
gaattcttctaaataagtaatcatgattgaaagttattaattatttgaacacaatcaattgataaataatttttacggtttatatgacacactagaattt |
440 |
Q |
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| T |
14202699 |
gaattcttctaaataagtaatcatgattgaaagttattaattatttgaacacaatcaattgataaataatttttacggtttatatgacacactagaattt |
14202600 |
T |
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| Q |
441 |
ctttaataaatttgcttagcacaaaaagtagaataaaagttggggaattgatgaattgtgtaaagacttttttcatttctctgccttcgaatacaggact |
540 |
Q |
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| T |
14202599 |
ctttaataaatttgcttagcacaaaaagtagaataaaagttggggaattgatgaattgtgcaaagacttttttcaatcctcttccttcgaatacaggact |
14202500 |
T |
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| Q |
541 |
aaaataaattttgaaatgagatattttaaaatagaatcagcactttgaaccaaaataggcagatagcttgagtgtttgaatttttcatgtcttttaactt |
640 |
Q |
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| T |
14202499 |
aaaataaattttgaaatgagatattttaaaatagaatcagcactttgaaccaaaataggcagatagcttgagtgtttgaatttttcatatcttttaactt |
14202400 |
T |
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| Q |
641 |
ttgatcatgtatgaaacatatattctaggttattatt |
677 |
Q |
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| T |
14202399 |
ttgatcatgtatgaaacatatattctaggttattatt |
14202363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 14203293 - 14203215
Alignment:
| Q |
13 |
attttgttggaatataatcttttgaattgctattttaagtaattatttattactagttctattattggcaaggacaata |
91 |
Q |
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| T |
14203293 |
attttgtaggaatataatcttttgaattgctattttaagtaattatttattactagttctattattggcaaggacaata |
14203215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 219 - 254
Target Start/End: Complemental strand, 14202932 - 14202897
Alignment:
| Q |
219 |
atgtttattctcactctttgaactataaagtatttc |
254 |
Q |
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| T |
14202932 |
atgtttattctcactctttgaactataaagtatttc |
14202897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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