View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2851_low_22 (Length: 253)
Name: NF2851_low_22
Description: NF2851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2851_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 33444205 - 33443961
Alignment:
| Q |
1 |
aaagaaataaaatcacataaatataataactaaataagatatacattattttcccctnnnnnnngatatacattattttctnnnnnnnnnnggtatacat |
100 |
Q |
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| T |
33444205 |
aaagaaataaaatcacataaatataa---ctaaataagatatacattattttcccttaaaaaaagatatacattattt-ctttcaaaaaaaggtatacat |
33444110 |
T |
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| Q |
101 |
tattttcttggcgaagaagnnnnnnnnnnnngttgatgtatttcttggggaagaagttttggattttgaaagcagtttacactttataaattgaaataat |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
33444109 |
tattttcttggcgaagaagtttttcttttttgttgatgtatttcttggggaagaagttttggattttgaaagcagtttacactttataaattgaaatatt |
33444010 |
T |
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| Q |
201 |
attagagctatattgcttgtgaaatcgtaaaacctcaatcgtgccttca |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33444009 |
attagagctatattgcttgtgaaatcgtaaaacctcaatcgtgccttca |
33443961 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 249
Target Start/End: Complemental strand, 8554584 - 8554507
Alignment:
| Q |
169 |
aaagcagtttacactttataaattgaaataatattagagctatattgcttgtgaaatcgtaaaacctcaatcgtgccttca |
249 |
Q |
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||||| |||||||||||||||||||| ||||||| | ||||||||||||||||| | |||| ||||||| ||| ||||| |
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| T |
8554584 |
aaagcggtttacactttataaattga---aatattataactatattgcttgtgaaaccataaaccctcaattgtggcttca |
8554507 |
T |
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