View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2851_low_24 (Length: 246)
Name: NF2851_low_24
Description: NF2851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2851_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 86 - 231
Target Start/End: Original strand, 16108791 - 16108936
Alignment:
| Q |
86 |
cactgtaactatcacacttcaatagcgtgaatactcaattcattttcaacttcctttgccttttgactgatattttacttaaatgctcaattcattttcc |
185 |
Q |
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| T |
16108791 |
cactgtaactatcacacttcaatagggtgaatactcaattcattttcaacttcctttgccttttgactgatattttacttaaatgctcaattcattttcc |
16108890 |
T |
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| Q |
186 |
gcagtcaagggtaaatacaaatagcatatggtaagcatttgaacat |
231 |
Q |
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| T |
16108891 |
gcagtcaagggtaaatacaaatagcatatggtaagcatttgaacat |
16108936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 86 - 230
Target Start/End: Complemental strand, 16326825 - 16326680
Alignment:
| Q |
86 |
cactgtaactatcacacttcaatagcgtgaatactcaattcattttcaacttcctttgccttttgactgatattttacttaaatgctcaattcattttcc |
185 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16326825 |
cactgtaattatcacacttcaatagggtgaatactcaattcattttcaacttcctttgccttttgactgatattttacttaaatgctcaattcattttcc |
16326726 |
T |
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| Q |
186 |
gcagtcaagggtaaatacaaatagcatatggtaagca-tttgaaca |
230 |
Q |
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| T |
16326725 |
ggaatcaagggtaaatacaaatagcatatggtaagcactttgaaca |
16326680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 113 - 191
Target Start/End: Complemental strand, 16327068 - 16326989
Alignment:
| Q |
113 |
tgaatactcaattcattttcaacttcctttgccttttgactgata-ttttacttaaatgctcaattcattttccgcagtc |
191 |
Q |
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| T |
16327068 |
tgaatactcaattcattttcaacttcctttgccttttgactgatatttttactaaaatgctcaattcattttccgcagtc |
16326989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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