View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2851_low_28 (Length: 237)
Name: NF2851_low_28
Description: NF2851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2851_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 52544784 - 52545005
Alignment:
| Q |
1 |
gcattaacatgcactccgtctatgtctatctgtcatgaatttattaatgtaatgtttttcttcactgtatatagcattgttttttagatttggaaaatga |
100 |
Q |
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| T |
52544784 |
gcattaacatgcaccccgtctatgtctatctgtcatgaatttattaatgtaatgtttttcttcactgtatatagcattgttttttagatttggaaaatga |
52544883 |
T |
|
| Q |
101 |
tttatatcgcagcatacattctcacgagagaatcgcgacacctaacattcagtcaaatagccaataattcaatggttgtatttcattcgtggtgtgtcgc |
200 |
Q |
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| T |
52544884 |
tttatatcgcagcatacattctcacgagagaatcacgacacctaacattcagtcaaatagccaataattcaatggttgtatttcattcgtggtgtgtcgc |
52544983 |
T |
|
| Q |
201 |
aatgtttttcttcgctgtatat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
52544984 |
aatgtttttcttcgctgtatat |
52545005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 52544984 - 52545024
Alignment:
| Q |
51 |
aatgtttttcttcactgtatatagcattgttttttagattt |
91 |
Q |
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| T |
52544984 |
aatgtttttcttcgctgtatatagcattgttctttagattt |
52545024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 31490930 - 31490853
Alignment:
| Q |
146 |
cattcagtcaaatagccaataattcaatggttgtatttcattcgtggtgtg-tcgcaatgtttttcttcgctgtatat |
222 |
Q |
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|||||||||||| | ||||||| |||||||||||||||||||||||| || || | ||||||||||||||| ||||| |
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| T |
31490930 |
cattcagtcaaacaaccaataaaccaatggttgtatttcattcgtggtctgctcactatgtttttcttcgctatatat |
31490853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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