View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2851_low_4 (Length: 653)
Name: NF2851_low_4
Description: NF2851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2851_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 22894869 - 22894567
Alignment:
| Q |
18 |
actagagacttttattttccatttggatgattgttctatttaaatctttacaatgatttgcaatgttatttatgcatctcctatccttctttatatgtat |
117 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22894869 |
actaaagacttttattttccatctggatgattgtactatttaaatctttacaatgggctgcaatgttatttatgcatctcctatccttctttatatgtat |
22894770 |
T |
|
| Q |
118 |
tgtgtgttgaattgataattctaacttgttagttttaatctagtacaaatttaaatgtcattgttgtttgtgtttgataatttgaaagatggtcaacaat |
217 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22894769 |
tgtgtgttgtattgataattttaacttgttagttttaatctagtacaaatttaaatgtcattgttgtttgtgtttgataatttgaaagatggtcaacaat |
22894670 |
T |
|
| Q |
218 |
tgatcctctttgttttaaatatctatttcaaattcttaatttcacattataagttaaaaatccagcaaatctatataaacgtggcagatggcctcatttt |
317 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22894669 |
tgatcctctttgttttaaatatctagttcaaattcttaatttcacattataagttaaaaatccagcaaatctatataaacgtggcagatggcctcatttt |
22894570 |
T |
|
| Q |
318 |
tat |
320 |
Q |
| |
|
||| |
|
|
| T |
22894569 |
tat |
22894567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 398 - 585
Target Start/End: Complemental strand, 22894538 - 22894351
Alignment:
| Q |
398 |
attcaactgggctttcaaaatcatgttgggccagataaggtccaacccgtgtatatccgcccggtaacccgcacaacccggtaacccgaacccgaactac |
497 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22894538 |
attcaattgggctttcaaaatcatgttgggccagataaggtccaacccgtatatatctgcccggtaacccgcacaacccggtaacccgaacccgaactac |
22894439 |
T |
|
| Q |
498 |
ccgcttactagttttgggcacaattgggccagatgtttgaacccttcgggttgggatgggctgccactttgggcccgaacccgcccga |
585 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22894438 |
ccgcttactagttttgggcacaattgggccagaggtttgaacccttcgggttgggatgggctgccactttgggcccgaacccgcccga |
22894351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 82 - 219
Target Start/End: Complemental strand, 15974404 - 15974270
Alignment:
| Q |
82 |
gttatttatgcatctcctatccttctttatatgtattgtgtgttgaattgataattctaacttgttagttttaatctagtacaaatttaaatgtcattgt |
181 |
Q |
| |
|
||||||||||||||| ||||||| | | |||||||||||||| | | |||||||| |||| || | |||| ||||||||| ||||||||||||||||| |
|
|
| T |
15974404 |
gttatttatgcatcttctatcctacatcatatgtattgtgtggtaa--tgataattttaacgtgctcgtttaaatctagtataaatttaaatgtcattg- |
15974308 |
T |
|
| Q |
182 |
tgtttgtgtttgataatttgaaagatggtcaacaattg |
219 |
Q |
| |
|
| || |||||||| ||||||||| ||||||| ||||| |
|
|
| T |
15974307 |
taattatgtttgatgatttgaaagttggtcaataattg |
15974270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 82 - 222
Target Start/End: Complemental strand, 15975658 - 15975524
Alignment:
| Q |
82 |
gttatttatgcatctcctatccttctttatatgtattgtgtgttgaattgataattctaacttgttagttttaatctagtacaaatttaaatgtcattgt |
181 |
Q |
| |
|
||||||||||||||| ||||||| | |||| |||| | || | | | ||| |||| ||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
15975658 |
gttatttatgcatcttctatcctacattatgtgtactatgcg--gcaatgaaaattttaacttgctagttttaatctagtacaattttaaatgtcattg- |
15975562 |
T |
|
| Q |
182 |
tgtttgtgtttgataatttgaaagatggtcaacaattgatc |
222 |
Q |
| |
|
||||||||||| ||||||||| |||||| |||||||| |
|
|
| T |
15975561 |
---ttgtgtttgatgatttgaaagttggtcagtaattgatc |
15975524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 164; Significance: 3e-87; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 398 - 585
Target Start/End: Complemental strand, 16296774 - 16296587
Alignment:
| Q |
398 |
attcaactgggctttcaaaatcatgttgggccagataaggtccaacccgtgtatatccgcccggtaacccgcacaacccggtaacccgaacccgaactac |
497 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16296774 |
attcaattgggctttcaaaatcatattgggccagataaggtccaacccgtatatatccgcccgttaacccgcacaacccgataacccgaacccgaactac |
16296675 |
T |
|
| Q |
498 |
ccgcttactagttttgggcacaattgggccagatgtttgaacccttcgggttgggatgggctgccactttgggcccgaacccgcccga |
585 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16296674 |
ccgcttactagttttgggcacaattgggccagaggtttgaacccttcgggttgggatgggctgccactttgggcccgaacccgcccga |
16296587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 398 - 585
Target Start/End: Complemental strand, 16304476 - 16304289
Alignment:
| Q |
398 |
attcaactgggctttcaaaatcatgttgggccagataaggtccaacccgtgtatatccgcccggtaacccgcacaacccggtaacccgaacccgaactac |
497 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16304476 |
attcaattgggctttcaaaatcatattgggccagataaggtccaacccgtatatatccgcccgttaacccgcacaacccgataacccgaacccgaactac |
16304377 |
T |
|
| Q |
498 |
ccgcttactagttttgggcacaattgggccagatgtttgaacccttcgggttgggatgggctgccactttgggcccgaacccgcccga |
585 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16304376 |
ccgcttactagttttgggcacaattgggccagaggtttgaacccttcgggttgggatgggctgccactttgggcccgaacccgcccga |
16304289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 223 - 322
Target Start/End: Complemental strand, 16296950 - 16296851
Alignment:
| Q |
223 |
ctctttgttttaaatatctatttcaaattcttaatttcacattataagttaaaaatccagcaaatctatataaacgtggcagatggcctcatttttattt |
322 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
16296950 |
ctctttgttttaaatatctagttcaaattcttaatttcacattataagttaaaaatccaacaaatctatataaacgtggcagatgacctcatttttattt |
16296851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 223 - 322
Target Start/End: Complemental strand, 16304652 - 16304553
Alignment:
| Q |
223 |
ctctttgttttaaatatctatttcaaattcttaatttcacattataagttaaaaatccagcaaatctatataaacgtggcagatggcctcatttttattt |
322 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
16304652 |
ctctttgttttaaatatctagttcaaattcttaatttcacattataagttaaaaatccaacaaatctatataaacgtggcagatgacctcatttttattt |
16304553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 16297382 - 16297302
Alignment:
| Q |
18 |
actagagacttttattttccatttggatgattgttctatttaaatctttacaatgatttgcaatgttatttatgcatctcc |
98 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| | ||||| ||||||||||||||||| |
|
|
| T |
16297382 |
actaaagacttttattttccatctggatgattgtactatttaaatctttacaatggtgtgcaaggttatttatgcatctcc |
16297302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 16305084 - 16305004
Alignment:
| Q |
18 |
actagagacttttattttccatttggatgattgttctatttaaatctttacaatgatttgcaatgttatttatgcatctcc |
98 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| | ||||| ||||||||||||||||| |
|
|
| T |
16305084 |
actaaagacttttattttccatctggatgattgtactatttaaatctttacaatggtgtgcaaggttatttatgcatctcc |
16305004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 159; Significance: 2e-84; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 2431437 - 2431652
Alignment:
| Q |
18 |
actagagacttttattttccatttggatgattgttcta-tttaaatctttacaatgatttgcaatgttatttatgcatctcctatccttctttatatgta |
116 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| ||| ||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2431437 |
actatagacttttattttccatctggatgactgtactaatttaaatctttacaatggtctgcaatgttatttatgcatctcctatccttctttatatgta |
2431536 |
T |
|
| Q |
117 |
ttgtgtgttgaattgataattctaacttgttagttttaatctagtacaaatttaaatgtcattgttgtttgtgtttgataatttgaaagatggtcaacaa |
216 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2431537 |
ttgtgtgttgtattgataattttaacttgttagttttaatctagtacaaatttaaatgtcattg----ttgtgtttgataatttgaaagatggtcaacaa |
2431632 |
T |
|
| Q |
217 |
ttgatcctctttgttttaaa |
236 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
2431633 |
ttgatcctctttgtcttaaa |
2431652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 398 - 585
Target Start/End: Original strand, 2432649 - 2432836
Alignment:
| Q |
398 |
attcaactgggctttcaaaatcatgttgggccagataaggtccaacccgtgtatatccgcccggtaacccgcacaacccggtaacccgaacccgaactac |
497 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2432649 |
attcaattgggctttcaatatcatgttgggccagataaggtccaacatgtaaatatccgcccggtaacccgcgcaacccggtaacccgaacccgaactac |
2432748 |
T |
|
| Q |
498 |
ccgcttactagttttgggcacaattgggccagatgtttgaacccttcgggttgggatgggctgccactttgggcccgaacccgcccga |
585 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||| |||||| |||| |
|
|
| T |
2432749 |
ctgcttactagttttggccacaattgggccagaggtttgaacccttcgggttgggatgagcttccactttgggcccaaacccgtccga |
2432836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 83 - 251
Target Start/End: Original strand, 14539457 - 14539623
Alignment:
| Q |
83 |
ttatttatgcatctcctatccttctttatatgtattgtgtgttgaattgataattctaacttgttagttttaatctagtacaaatttaaatgtcattgtt |
182 |
Q |
| |
|
||||||||||||||||||||| | |||| |||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14539457 |
ttatttatgcatctcctatccaacattatgtgtattgtgtgtggtattgataattttaacttgttagttttaatctagtacaaatttaaatctcattg-- |
14539554 |
T |
|
| Q |
183 |
gtttgtgtttgataatttgaaagatggtcaacaattgatcctcttt--gttttaaatatctatttcaaatt |
251 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||| ||| |||||||||||||| ||| |||| |
|
|
| T |
14539555 |
--ttgtgtttgataatttgaaagttggtaaacaattgatcctgttttagttttaaatatctagttcgaatt |
14539623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 232 - 320
Target Start/End: Original strand, 2432520 - 2432609
Alignment:
| Q |
232 |
ttaaatatctatttcaaattcttaatttcacattataagttaaaaatccagcaaatctatataaacgtggcaga-tggcctcatttttat |
320 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2432520 |
ttaaatatctagttcaaattcttaatttcacataataagttaaaaatccagcaaatctatataaacgtggcagagaggcctcatttttat |
2432609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 479 - 585
Target Start/End: Original strand, 14539819 - 14539925
Alignment:
| Q |
479 |
taacccgaacccgaactaccc-gcttactagttttgggcacaattgggccagatgtttgaacccttcgggttgggatgggctgccactttgggcccgaac |
577 |
Q |
| |
|
|||||||||| |||||||||| || || ||||||||||||||||| || |||||| || ||| | ||||||| |||| |||||||||||| |||||| |
|
|
| T |
14539819 |
taacccgaactcgaactaccccgcacaccagttttgggcacaattgtgcaagatgtctggacctgt-gggttggactgggttgccactttgggtccgaac |
14539917 |
T |
|
| Q |
578 |
ccgcccga |
585 |
Q |
| |
|
|||||||| |
|
|
| T |
14539918 |
ccgcccga |
14539925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 3873581 - 3873512
Alignment:
| Q |
148 |
agttttaatctagtacaaatttaaatgtcattgttgtttgtgtttgataatttgaaagatggtcaacaattgat |
221 |
Q |
| |
|
||||||||||||||| |||||||||| |||||| || |||||||||||||||||| | |||||||||||| |
|
|
| T |
3873581 |
agttttaatctagtataaatttaaatttcattg----ttatgtttgataatttgaaagttaatcaacaattgat |
3873512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 593
Target Start/End: Complemental strand, 43064335 - 43064307
Alignment:
| Q |
565 |
tttgggcccgaacccgcccgaacccgccc |
593 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
43064335 |
tttgggcccgaacccgcccgaacccgccc |
43064307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 593
Target Start/End: Complemental strand, 39289043 - 39289015
Alignment:
| Q |
565 |
tttgggcccgaacccgcccgaacccgccc |
593 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
39289043 |
tttgggcccgaacccgcccgaacccgccc |
39289015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 593
Target Start/End: Original strand, 39384293 - 39384321
Alignment:
| Q |
565 |
tttgggcccgaacccgcccgaacccgccc |
593 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
39384293 |
tttgggcccgaacccgcccgaacccgccc |
39384321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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