View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2851_low_6 (Length: 529)
Name: NF2851_low_6
Description: NF2851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2851_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 14 - 289
Target Start/End: Complemental strand, 14176621 - 14176345
Alignment:
| Q |
14 |
tatttaatatgaaatgcttgatataattatatatgagtatgtttgtcgaaccttttg-tttatgaaattttttaaagatgcaaatgtacataagcatttt |
112 |
Q |
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| T |
14176621 |
tatttaatatgatattcttgatataattatatatgtttatgttcgtcaaaccttctggtttatgaaattttttaaatatgcaaatgtacaaaagcatttt |
14176522 |
T |
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| Q |
113 |
atgttgtttgttggactctagggtattcaaattatataatccaaaattcagcaaaaatgagaatttcagaaggcttgcgagaatatcggaggtttggaaa |
212 |
Q |
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| T |
14176521 |
ctgtggtttgttggactctagggtattcaaattatataatccaaaattcagcaaaaatgagaatttcagaaggcttgcgagaatatcggaggtttggaaa |
14176422 |
T |
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| Q |
213 |
caaaattctcaaatttctattgtgaagttatatttttagattttagaacgagaagattaaaattgtgaatcaacaag |
289 |
Q |
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| T |
14176421 |
caaaattctcaaatttctattgtgaaattatatttttagattttagaacgagaagattaaaattgtgaatcaacaag |
14176345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 380 - 510
Target Start/End: Complemental strand, 14176254 - 14176114
Alignment:
| Q |
380 |
gacatttgatatgttgtggtatgagttcaaatatacaatttcctacggctaggccgtaagtctatgcgagtttcactgctagactcttaaaaacaaa--- |
476 |
Q |
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| T |
14176254 |
gacattcgatatgttgtggtatgagttcaaatatacaatttcctacggctaggccgtaagtctatgcgagtttcaccgctagactcttaaaaacaaaaca |
14176155 |
T |
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| Q |
477 |
-------acaatataatagaagcaaatgcaaagcaacgtat |
510 |
Q |
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| T |
14176154 |
aaacaaaacaatataatagaagcaaatgcaaagcaacgtat |
14176114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 172
Target Start/End: Original strand, 48785264 - 48785297
Alignment:
| Q |
139 |
tcaaattatataatccaaaattcagcaaaaatga |
172 |
Q |
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| T |
48785264 |
tcaaattatataatccaaaattctgcaaaaatga |
48785297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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