View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2851_low_8 (Length: 473)
Name: NF2851_low_8
Description: NF2851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2851_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 6 - 469
Target Start/End: Complemental strand, 14177031 - 14176568
Alignment:
| Q |
6 |
cacagatagatcgaatggcagtcattttttatggtaaacttttctctctgaatttagttcatgtttaatgtcattatattacatgtatatctgaaggacg |
105 |
Q |
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| T |
14177031 |
cacagatagatcgaatggcagtcattttttatggtaaacttttctctctgaatttagttcatgtttaatgtcattatattacatgtatatctgaaggacg |
14176932 |
T |
|
| Q |
106 |
ggtgtccaatcctctcacattttaactatatgcacaacatcattgagatggtgcagagccttgggagcttgggtatatttgtaggatggctagttgtaat |
205 |
Q |
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| T |
14176931 |
ggtgtctaatcctctcacattttaactatatgcacaacatcattgagatggtgcagagccttgggagcttgggtatattcgtaggatggctagttgtaat |
14176832 |
T |
|
| Q |
206 |
gaactaagtcgtgcggcaggtcatgagataattgagatgatgatgtggtgattgttgaaaactttgagaaggaatagaaagttgttgatgataagaaagt |
305 |
Q |
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| T |
14176831 |
gaactaagtcgtgtggcaggtcatgagataattgagatgatgatgtggtgattgttgaaaactttgagaaggaatagaaagctgttgatgataagaaagt |
14176732 |
T |
|
| Q |
306 |
tgaccacggagtaaaggatgaaattgatagtcttgaaattgataattgttgcatagaccacgtgacgaattaaattaaatgaatatcattagagaagtaa |
405 |
Q |
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| T |
14176731 |
tgacgacggagtaaaggatgaagttgatagtcttgaaattgataattgttgcatagaccacgtgacaaattaaattaaatgaatatcattagagaagtaa |
14176632 |
T |
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| Q |
406 |
acacatattctatttaatatgatattcttgatataattatatatgtttatgttcgtcaaacctt |
469 |
Q |
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| T |
14176631 |
acacatattctatttaatatgatattcttgatataattatatatgtttatgttcgtcaaacctt |
14176568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 16964492 - 16964556
Alignment:
| Q |
204 |
atgaactaagtcgtgcggcaggtcatgagataatt-gagatgatgatgtggtgattgttgaaaac |
267 |
Q |
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| T |
16964492 |
atgaacttagtcgtgttgcaggtaatgtgatagttagagatgatgatgtggtgatagttgaaaac |
16964556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 363
Target Start/End: Complemental strand, 6811625 - 6811501
Alignment:
| Q |
239 |
gagatgatgatgtggtgattgttgaaaactttgagaaggaatagaaagttgttgatgataagaaagttgaccacggagtaaaggatgaaattgatagtct |
338 |
Q |
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| T |
6811625 |
gagatgatgatatgttgattgttgaaaacctttagaaggaagagagggttattgatgataagaatgttcaagatggagtaaaagttgaagttgatagtct |
6811526 |
T |
|
| Q |
339 |
tgaaattgataattgttgcatagac |
363 |
Q |
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| T |
6811525 |
tgaaattaatgattgtagtatagac |
6811501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 212 - 354
Target Start/End: Original strand, 12124013 - 12124155
Alignment:
| Q |
212 |
agtcgtgcggcaggtcatgagataattgagatgatgatgtggtgattgttgaaaactttgagaaggaatagaaagttgttgatgataagaaagttgacca |
311 |
Q |
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|||||||| |||||| |||||| || |||||||| || ||||||||||| || | ||||||||| ||||||||| || ||||||||| ||||| | |
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| T |
12124013 |
agtcgtgcagcaggttatgagacaacatggatgatgacgtagtgattgttgacaatctcgagaaggaagagaaagttgatgttgataagaatgttgaaga |
12124112 |
T |
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| Q |
312 |
cggagtaaaggatgaaattgatagtcttgaaattgataattgt |
354 |
Q |
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| T |
12124113 |
tggagtaaaggtttaagttgatagtcttggaattgattattgt |
12124155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 308
Target Start/End: Original strand, 13750659 - 13750728
Alignment:
| Q |
239 |
gagatgatgatgtggtgattgttgaaaactttgagaaggaatagaaagttgttgatgataagaaagttga |
308 |
Q |
| |
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| T |
13750659 |
gagacgatcatgttgtgattgttgaaaaccttgagaaggaagagaatgttgttgttgataagaaggttga |
13750728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 470
Target Start/End: Original strand, 5505780 - 5505861
Alignment:
| Q |
385 |
tgaatatcattagagaagtaaacacatattctatttaatatgatattcttgatataattatatatgtttatgttcgtcaaaccttt |
470 |
Q |
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| T |
5505780 |
tgaatatcattagggaactaaacacatattatatataata----atttttcatataattatatatgtttattttggtcaaatcttt |
5505861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 308
Target Start/End: Complemental strand, 41061027 - 41060967
Alignment:
| Q |
248 |
atgtggtgattgttgaaaactttgagaaggaatagaaagttgttgatgataagaaagttga |
308 |
Q |
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| T |
41061027 |
atgtagtgattattgaaaacctcgagaaggaagaggaagttgttgatcataagaaagttga |
41060967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 6023620 - 6023671
Alignment:
| Q |
228 |
atgagataattg-agatgatgatgtggtgattgttgaaaactttgagaagga |
278 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||| || ||||||| |
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| T |
6023620 |
atgagataattggagatgatgatgtggtgatagttgaaaacctttagaagga |
6023671 |
T |
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