View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2851_low_9 (Length: 461)
Name: NF2851_low_9
Description: NF2851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2851_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 50 - 433
Target Start/End: Original strand, 26767474 - 26767860
Alignment:
| Q |
50 |
aatataattcattttaccttgtcaaattaaagaagaaaataaaaaatctaattcatcttttaatgaaattgcactttataattttttagtttacttctnn |
149 |
Q |
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| T |
26767474 |
aatataattcattttaccttgtcaaattaaaaaagaaaacaaaaaatctaattcatcttttaatgaaattgcactttataattttttagtttacttctaa |
26767573 |
T |
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| Q |
150 |
nnnnnnnnnnnntcaagaatcaactttattttgataaacgaaatttacttgtataagtacaagggatactcaa-----aactcattacaacttaactaca |
244 |
Q |
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| T |
26767574 |
aaaaaaaaaa--tcaagaatcaactttatttttataaacaaaatttacttatataagtacaagggatactcaaatcaaaactcattacaacttaactaca |
26767671 |
T |
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| Q |
245 |
tcatacactttgaaggcataagagagacatactccacaaatcttaaaataaaatgaaattcttatttctactctccctagtagtaaacaatgatccacca |
344 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26767672 |
tcaaacactttgaaggcataagagagacatactccacaaatcttaaaataaaatgaaattcttatttctactctccctattagtaaacaatgatccacca |
26767771 |
T |
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| Q |
345 |
cctctaaaatgtctgcgattttgtcgttaaataatattattgcactccaatcaaatacactaaattatagtgagcatattaaatgtgaa |
433 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26767772 |
cctctaaaatgtctgcgattttctcgttaaataatattattgcactccaatcaaatacactaaattatagtgagcatattaaatgtgaa |
26767860 |
T |
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