View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2852_high_1 (Length: 500)
Name: NF2852_high_1
Description: NF2852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2852_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 20 - 485
Target Start/End: Complemental strand, 3619029 - 3618564
Alignment:
| Q |
20 |
accttagcaatcctctcagtaggaaccaatggaagataagcagaaactctataacctttttccgcactcgaaacaacagcttcattatacttctcactac |
119 |
Q |
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| T |
3619029 |
accttagcaatcctctcagtaggaaccaatggaagataagcagaaactctataacctttctccgcactcgaaacaacagcttcattatacttctcactac |
3618930 |
T |
|
| Q |
120 |
aataagcagcttttggcaaaaccacgtttgcaacagtaggaaacaaaggaagctgattcaacctcttccaagccgaaacagcacactgctccgctttcgg |
219 |
Q |
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| T |
3618929 |
aataagcagcttttggcaaaaccacgtttgcaacagtaggaaacaaaggaagctgattcaacctcttccaagccgaaacagcacactgctccgctttcgg |
3618830 |
T |
|
| Q |
220 |
ttcatatttcgagtaaacagttttcgcaagtccagaagcagattcaacaacaccggtgcgacggacttcgctgacgacagaggcagcttgatttgaaacc |
319 |
Q |
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| T |
3618829 |
ttcatatttcgagtaaacagttttcgcaagtccagaagcagattcaacaacaccggtgcgacggacttcgctgacgacagaggcagcttgatttgaaacc |
3618730 |
T |
|
| Q |
320 |
ttcttgacgttagtaggaacatgacgatcgatctcagaaacggattcatcaactttgcgatcaacgtatttgagaagctcgacagggacttggtggaatt |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3618729 |
ttcttgacgttagtaggaacatgacgatcgatctcagaaacggattcatcaactttgcgatcaacgtatttgagaagctcgactgggacttggtggaatt |
3618630 |
T |
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| Q |
420 |
tgtcgtagactggtccaacgacggttttaacagcttcttcgacggtgtcaacgccggatttcaatg |
485 |
Q |
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| T |
3618629 |
tgtcgtagactggtccaacgacggttttaacagcttcttcgacggtgtcaacgccggatttcaatg |
3618564 |
T |
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Back To:
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Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 45199059 - 45198993
Alignment:
| Q |
113 |
tcactacaataagcagcttttggcaaaaccacgtttgcaacagtaggaaacaaaggaagctgattca |
179 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45199059 |
tcactacaataagcagcttttggcaaaaccacgtttgcaacattaggaaacaaaggaagctgattca |
45198993 |
T |
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