View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2852_high_14 (Length: 297)
Name: NF2852_high_14
Description: NF2852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2852_high_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 43170272 - 43170547
Alignment:
| Q |
1 |
aaaaccacacaaacatgagagtagagaacaatttcaagtttaaaaacaatacaaagaacacgagcagcatttacccgtgtcatagtagatgtatcccaga |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43170272 |
aaaaccacacaaacatgagaatagagaaaaatttcaagtttaaaaacaatacaaagaacacaagcag--tttacccgtgtcatagtagatgtatcccaga |
43170369 |
T |
|
| Q |
101 |
gctggacaatggaattcatgaaaccaatggcttaaatgtgtccatctggctcccagctaacacttgtgataggaccatcttccagcgttgtagggagagc |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43170370 |
gctggacaatggaattcatcaaaccaatggctaaaatgtgtccatctggctgccagctaacacttgtgataggaccatcttccagcgttgtagggagagc |
43170469 |
T |
|
| Q |
201 |
aacagaatcatagaaaccatcggaatcactacaaagaacaactgtatcattgagtgctatggaaaggacaccagttct |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43170470 |
aacagaatcatagaaaccatcggaatcactacaaagaacaactatatcattgagtgctatggaaaggacaccagttct |
43170547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 43218064 - 43217789
Alignment:
| Q |
1 |
aaaaccacacaaacatgagagtagagaacaatttcaagtttaaaaacaatacaaagaacacgagcagcatttacccgtgtcatagtagatgtatcccaga |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43218064 |
aaaaccacacaaacatgagaatagagaacaatttcaagtttaaaaacaatacaaagaacacaagcag--tttacccgtgtcatagtagatgtatcccaga |
43217967 |
T |
|
| Q |
101 |
gctggacaatggaattcatgaaaccaatggcttaaatgtgtccatctggctcccagctaacacttgtgataggaccatcttccagcgttgtagggagagc |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43217966 |
gctggacaatggaattcatcaaaccaatggctaaaatgtgtccatctggctgccagctaacacttgtgataggaccatcttccagcgttgtagggagagc |
43217867 |
T |
|
| Q |
201 |
aacagaatcatagaaaccatcggaatcactacaaagaacaactgtatcattgagtgctatggaaaggacaccagttct |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43217866 |
aacagaatcatagaaaccatcggaatcactacaaagaacaacaatatcattgagtgctatggaaaggacaccagttct |
43217789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University