View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2852_high_4 (Length: 433)
Name: NF2852_high_4
Description: NF2852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2852_high_4 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 433
Target Start/End: Complemental strand, 38093026 - 38092611
Alignment:
| Q |
18 |
aatcccattgtttccttttt-ccaatatttctcattcaagaaaacaacatatagggtttctttccttctgcaccctttgagtcaattctgcatgctttgt |
116 |
Q |
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| T |
38093026 |
aatcccattgtttccttttttccaatatttctcattcaagaaaacaacatatagggtttcttg-----tgcaccctttgagtcaattctgcatgctttgt |
38092932 |
T |
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| Q |
117 |
tgtctccattagccttgaccccaacagttcatgtacataactttctgaagagaatcatcggtttgtctcaacttctctttcgcctcagaactaatgacgg |
216 |
Q |
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| T |
38092931 |
tgtctccattagccctgaccccaacagttcatgtacataactttctgaagagaatcatcggtttgtctcaacttcttttttggctcagaactcacgacgg |
38092832 |
T |
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| Q |
217 |
ttgcttccgatacaacgatgctggaaaccgggaagattgccaacaaagcaccaccggcggagaagagacgagtccggttttggtgaatagttgcaagagc |
316 |
Q |
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| T |
38092831 |
ttgcttccgatacaaagacgctggacaacggcaagagtgccgacaaagcacctccggcggagaagagacgagttcggttttggtgaatagttcccagagc |
38092732 |
T |
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| Q |
317 |
tgatttgcacttatggattggatcagtgtggccttgtgccacagccacggttgctgccatccaaacacggttcaagtaactcatctt----tttgctttt |
412 |
Q |
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| T |
38092731 |
tgatttgcagttatggattggttcagtgtggccttgtgccacagccatggttgctgccatccaaacacggttcatgtaactcatatttatgtttgctttt |
38092632 |
T |
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| Q |
413 |
ctctttc-tttaagcctttgct |
433 |
Q |
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| T |
38092631 |
-tctttcttttaagcctttgct |
38092611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 125 - 404
Target Start/End: Complemental strand, 38089937 - 38089661
Alignment:
| Q |
125 |
ttagccttgaccccaacagttcatgtacataactttctgaagagaatcatcggtttgtctcaacttctctttcgcctcagaactaatgacggttgcttcc |
224 |
Q |
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| T |
38089937 |
ttagccttgaccccaacaattcatgtacataactttctggagagaatcatcggtttgtctcagcttctcttcaaccttagaactca---cggttgcgtcc |
38089841 |
T |
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| Q |
225 |
gatacaacgatgctggaaaccgggaagattgccaacaaagcaccaccggcggagaagagacgagtccggttttggtgaatagttgcaagagctgatttgc |
324 |
Q |
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| T |
38089840 |
gatacaacgacgctggacagtggcaagagtgccgacaaagcaccgcccgcagagaagagacgagttcggttttggtgaatagttccaagagctgttttgc |
38089741 |
T |
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| Q |
325 |
acttatggattggatcagtgtggccttgtgccacagccacggttgctgccatccaaacacggttcaagtaactcatcttt |
404 |
Q |
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| T |
38089740 |
acttatagattggatcagtgtggccttgtgccaccgccactgttgctgccatccaaacacggttcaaataactcatcttt |
38089661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 270 - 401
Target Start/End: Complemental strand, 38096058 - 38095927
Alignment:
| Q |
270 |
ccggcggagaagagacgagtccggttttggtgaatagttgcaagagctgatttgcacttatggattggatcagtgtggccttgtgccacagccacggttg |
369 |
Q |
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|||||||||||||||||||| ||||| |||||||||| | | | |||| ||||||||| ||| |||||| ||||||||||| ||||| || ||||||| |
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| T |
38096058 |
ccggcggagaagagacgagttcggttctggtgaatagatccgacggctgttttgcacttgtggcctggatcggtgtggccttgcgccaccgctacggttg |
38095959 |
T |
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| Q |
370 |
ctgccatccaaacacggttcaagtaactcatc |
401 |
Q |
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| T |
38095958 |
ctgccatccaaacacggttcaagtaactcatc |
38095927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 38096191 - 38096104
Alignment:
| Q |
125 |
ttagccttgaccccaacagttcatgtacataactttctgaagagaatcatcggtttgtctcaacttctctttcgcctcagaactaatg |
212 |
Q |
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| T |
38096191 |
ttagccttgaccccagcaattcatgtacataactttccgaagagaatcatcggttcttcttagcttctcatccgcttcagaactcatg |
38096104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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