View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2852_high_5 (Length: 426)

Name: NF2852_high_5
Description: NF2852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2852_high_5
NF2852_high_5
[»] chr8 (29 HSPs)
chr8 (1-410)||(10678150-10678540)
chr8 (1-103)||(35181516-35181618)
chr8 (1-103)||(34304788-34304890)
chr8 (1-103)||(16603624-16603726)
chr8 (1-103)||(18066716-18066818)
chr8 (1-102)||(16358831-16358933)
chr8 (1-101)||(33629991-33630091)
chr8 (4-103)||(1375542-1375641)
chr8 (9-101)||(20148762-20148854)
chr8 (4-103)||(5754903-5755002)
chr8 (4-103)||(11582766-11582865)
chr8 (4-103)||(29705362-29705461)
chr8 (4-103)||(36743484-36743583)
chr8 (4-101)||(29800951-29801048)
chr8 (4-101)||(42295197-42295294)
chr8 (4-103)||(40528635-40528735)
chr8 (4-101)||(26125637-26125734)
chr8 (9-101)||(42699259-42699351)
chr8 (4-103)||(30660743-30660842)
chr8 (4-95)||(31384672-31384763)
chr8 (4-103)||(42197436-42197535)
chr8 (16-101)||(30912575-30912660)
chr8 (4-103)||(2165964-2166063)
chr8 (4-103)||(2546996-2547095)
chr8 (1-103)||(19386563-19386670)
chr8 (15-102)||(45397317-45397404)
chr8 (4-101)||(3743773-3743870)
chr8 (4-61)||(9241594-9241651)
chr8 (212-249)||(43892398-43892435)
[»] chr1 (24 HSPs)
chr1 (1-103)||(35003294-35003396)
chr1 (1-103)||(48119628-48119730)
chr1 (1-103)||(44112677-44112779)
chr1 (1-103)||(38113193-38113295)
chr1 (1-103)||(38335918-38336020)
chr1 (1-103)||(45639730-45639832)
chr1 (1-103)||(46168383-46168485)
chr1 (2-103)||(41065153-41065254)
chr1 (1-103)||(45427743-45427845)
chr1 (1-103)||(45705825-45705927)
chr1 (1-103)||(35000111-35000213)
chr1 (4-103)||(37814778-37814877)
chr1 (4-103)||(43571087-43571186)
chr1 (1-103)||(26585462-26585564)
chr1 (9-101)||(2497568-2497660)
chr1 (4-103)||(5489776-5489875)
chr1 (4-103)||(23989524-23989624)
chr1 (56-103)||(14427347-14427394)
chr1 (4-103)||(48498963-48499062)
chr1 (4-103)||(750306-750405)
chr1 (4-103)||(24769500-24769599)
chr1 (4-101)||(7447828-7447924)
chr1 (4-101)||(4401329-4401427)
chr1 (15-103)||(50448272-50448360)
[»] chr3 (25 HSPs)
chr3 (1-103)||(25996268-25996370)
chr3 (1-103)||(9434124-9434226)
chr3 (1-103)||(10457890-10457992)
chr3 (1-103)||(4190263-4190365)
chr3 (1-103)||(51757593-51757695)
chr3 (1-103)||(52627975-52628077)
chr3 (1-103)||(34791829-34791931)
chr3 (9-103)||(45126934-45127028)
chr3 (15-103)||(42100688-42100776)
chr3 (4-103)||(40808865-40808964)
chr3 (4-103)||(46941053-46941152)
chr3 (4-102)||(54237097-54237195)
chr3 (4-103)||(24688403-24688502)
chr3 (4-103)||(25413681-25413780)
chr3 (4-103)||(36150130-36150229)
chr3 (4-103)||(54246149-54246248)
chr3 (4-102)||(40480750-40480848)
chr3 (4-102)||(42394420-42394518)
chr3 (4-101)||(27748565-27748662)
chr3 (4-101)||(53581859-53581956)
chr3 (3-103)||(53273684-53273784)
chr3 (4-103)||(47191027-47191125)
chr3 (18-99)||(29558249-29558330)
chr3 (4-88)||(51249323-51249407)
chr3 (4-61)||(52629870-52629927)
[»] chr6 (18 HSPs)
chr6 (1-103)||(33242403-33242505)
chr6 (1-101)||(27441544-27441644)
chr6 (3-103)||(33253913-33254013)
chr6 (4-103)||(3213400-3213499)
chr6 (4-103)||(13743222-13743321)
chr6 (4-103)||(13748722-13748821)
chr6 (9-101)||(24203993-24204085)
chr6 (4-103)||(7273336-7273435)
chr6 (4-103)||(9698334-9698433)
chr6 (4-103)||(26670010-26670109)
chr6 (4-103)||(21293678-21293777)
chr6 (4-103)||(26466799-26466898)
chr6 (4-103)||(30014343-30014442)
chr6 (4-103)||(7292747-7292846)
chr6 (4-103)||(21279929-21280028)
chr6 (9-103)||(7367549-7367643)
chr6 (1-103)||(31109220-31109322)
chr6 (4-101)||(30735984-30736081)
[»] chr4 (38 HSPs)
chr4 (1-103)||(17619150-17619252)
chr4 (1-103)||(711960-712062)
chr4 (1-103)||(32728357-32728459)
chr4 (1-103)||(55272374-55272476)
chr4 (1-103)||(960868-960970)
chr4 (9-101)||(3756252-3756344)
chr4 (2-101)||(35037007-35037106)
chr4 (1-103)||(46827704-46827806)
chr4 (1-103)||(48435577-48435679)
chr4 (1-70)||(19879987-19880056)
chr4 (1-101)||(38851515-38851615)
chr4 (16-103)||(28982835-28982922)
chr4 (4-103)||(28988473-28988572)
chr4 (4-103)||(23035980-23036079)
chr4 (4-103)||(33703141-33703240)
chr4 (9-103)||(27864564-27864658)
chr4 (4-101)||(27893843-27893940)
chr4 (15-103)||(1771278-1771366)
chr4 (15-103)||(55966358-55966446)
chr4 (1-61)||(36004114-36004174)
chr4 (23-103)||(49229684-49229764)
chr4 (4-103)||(25051693-25051792)
chr4 (4-103)||(27316714-27316813)
chr4 (4-103)||(27550309-27550408)
chr4 (4-102)||(41878407-41878505)
chr4 (9-103)||(48463456-48463550)
chr4 (4-101)||(31680904-31681001)
chr4 (4-101)||(41327544-41327641)
chr4 (4-103)||(35017733-35017831)
chr4 (4-103)||(41847971-41848070)
chr4 (4-103)||(45490314-45490413)
chr4 (15-101)||(43514698-43514784)
chr4 (4-101)||(43949802-43949900)
chr4 (4-103)||(12496956-12497055)
chr4 (4-101)||(39631102-39631200)
chr4 (4-100)||(23204779-23204875)
chr4 (67-103)||(36004168-36004204)
chr4 (130-224)||(47209992-47210086)
[»] chr2 (31 HSPs)
chr2 (1-103)||(43114557-43114659)
chr2 (1-103)||(966832-966934)
chr2 (1-103)||(18491705-18491807)
chr2 (1-101)||(11825652-11825752)
chr2 (1-101)||(41281972-41282072)
chr2 (1-103)||(12415458-12415560)
chr2 (1-103)||(12427518-12427620)
chr2 (1-103)||(16803968-16804070)
chr2 (1-103)||(16843250-16843352)
chr2 (3-101)||(4299420-4299518)
chr2 (1-103)||(14285676-14285778)
chr2 (1-103)||(34895739-34895841)
chr2 (4-102)||(34817777-34817875)
chr2 (4-103)||(1750414-1750513)
chr2 (4-103)||(4764727-4764826)
chr2 (18-101)||(6518484-6518566)
chr2 (4-103)||(30838632-30838731)
chr2 (4-103)||(12302254-12302353)
chr2 (4-103)||(13780736-13780835)
chr2 (4-103)||(16096747-16096846)
chr2 (4-102)||(19047158-19047256)
chr2 (1-85)||(12531661-12531744)
chr2 (1-79)||(4451948-4452026)
chr2 (4-101)||(43490402-43490499)
chr2 (15-101)||(7070418-7070504)
chr2 (7-101)||(8896587-8896681)
chr2 (4-103)||(43335764-43335863)
chr2 (24-101)||(33229303-33229381)
chr2 (7-103)||(42026767-42026865)
chr2 (9-61)||(42849864-42849916)
chr2 (67-103)||(42849910-42849946)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-101)||(45717-45817)
[»] chr7 (29 HSPs)
chr7 (1-103)||(31513287-31513389)
chr7 (1-103)||(40236919-40237021)
chr7 (1-102)||(31408631-31408732)
chr7 (1-103)||(27535229-27535331)
chr7 (4-101)||(4638200-4638297)
chr7 (1-103)||(33384870-33384973)
chr7 (4-101)||(10573751-10573848)
chr7 (9-101)||(44326180-44326272)
chr7 (4-103)||(5810925-5811024)
chr7 (4-103)||(24001013-24001112)
chr7 (4-103)||(42538432-42538531)
chr7 (4-103)||(5194232-5194331)
chr7 (4-103)||(35069721-35069820)
chr7 (4-101)||(43343625-43343722)
chr7 (4-101)||(44416935-44417032)
chr7 (4-103)||(5015395-5015494)
chr7 (4-103)||(24280597-24280696)
chr7 (9-100)||(26898408-26898499)
chr7 (4-103)||(45326020-45326119)
chr7 (4-103)||(41861674-41861775)
chr7 (15-103)||(42972852-42972940)
chr7 (184-284)||(25663952-25664052)
chr7 (36-103)||(39998408-39998475)
chr7 (4-94)||(32029818-32029908)
chr7 (4-101)||(16180358-16180454)
chr7 (15-103)||(9216302-9216389)
chr7 (4-103)||(43317443-43317542)
chr7 (4-87)||(27393261-27393344)
chr7 (4-65)||(38160580-38160641)
[»] chr5 (13 HSPs)
chr5 (1-103)||(17208074-17208176)
chr5 (1-103)||(32473392-32473494)
chr5 (1-103)||(30622717-30622818)
chr5 (4-103)||(7617133-7617232)
chr5 (4-103)||(2614650-2614749)
chr5 (4-103)||(22512305-22512404)
chr5 (4-103)||(38470579-38470678)
chr5 (4-103)||(41334664-41334763)
chr5 (4-101)||(5256997-5257094)
chr5 (4-103)||(18033982-18034081)
chr5 (31-103)||(33855071-33855143)
chr5 (4-103)||(33801469-33801568)
chr5 (46-101)||(25915030-25915085)
[»] scaffold0100 (1 HSPs)
scaffold0100 (1-103)||(35454-35556)
[»] scaffold0385 (1 HSPs)
scaffold0385 (4-103)||(11251-11350)
[»] scaffold0119 (1 HSPs)
scaffold0119 (4-103)||(685-784)
[»] scaffold0038 (1 HSPs)
scaffold0038 (4-102)||(112656-112754)
[»] scaffold0187 (2 HSPs)
scaffold0187 (4-103)||(14189-14288)
scaffold0187 (4-103)||(24517-24616)
[»] scaffold0157 (1 HSPs)
scaffold0157 (4-103)||(23422-23521)


Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 10678150 - 10678540
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||| ||||||||||||||    
T  10678150 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgta------------tgattaaagggtattcatgtaacattt 10678237  T
Q  101 tccnnnnnnnnnnnnnnngttgtaattacaaattaagccgcctgaacacctttagccaaaccttaaacaccacatcacaatgcaagaagatgtgagaaga 200  Q
    |||               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10678238 tccttttttttgttg---gttgtaattacaaattaagccgcctgaacacctttagccaaaccttaaacaccacatcacaatgcaagaagatgtgagaaga 10678334  T
Q  201 actttcctcaccaccaccacaaaaagcacaattctaagaagcacccggtgttaagacatttctccttgagaaattaatctttgttgagatatgattgatc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    |||||    
T  10678335 actttcctcaccaccaccacaaaaagcacaattctaagaagcacccggtgttaagacatttctccttgagaaattaatctttgttgggata----tgatc 10678430  T
Q  301 taaaaggagtttcctagagatatcaacggtctttgatgacttttaaccattaccttccaacaactacacaccctctccccatatttacacctgaggacat 400  Q
    || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  10678431 tagaaggagtttccttgagatatcaacggtctttgatgacttttaaccattaccttccaacaaccacacaccctctccccatatttacacttgaggacat 10678530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 35181618 - 35181516
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35181618 tgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 35181519  T
Q  101 tcc 103  Q
    |||    
T  35181518 tcc 35181516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 34304890 - 34304788
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34304890 tgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaaggatgttcatgtaacattt 34304791  T
Q  101 tcc 103  Q
    |||    
T  34304790 tcc 34304788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 16603624 - 16603726
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||  |||||||||| |||| |||||||||||||||||||| ||||||||||||    
T  16603624 tgaaagagtaagtatggttgtgagatgaatttaccaaaatgtctttaatgcatggggtgtataataaggtgtatgattaaagggtgtgcatgtaacattt 16603723  T
Q  101 tcc 103  Q
    |||    
T  16603724 tcc 16603726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 18066716 - 18066818
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    ||||||||||||||||||||||||||||| |||| ||||| ||| ||||| ||||| ||||||||||  |||||||||||||||||||||||||||||||    
T  18066716 tgaaagagaaagtatggttgtgagatgaaattactaaaatatccctaatacatgggatgtacaatagaatgtatgattaaagggtgttcatgtaacattt 18066815  T
Q  101 tcc 103  Q
    |||    
T  18066816 tcc 18066818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 16358831 - 16358933
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttc-atgtaacatt 99  Q
    ||||| ||||||||||||||||||||||||||| |||||| | ||||||  ||||| |||||||||||||||||||||||||||| ||| ||||||||||    
T  16358831 tgaaaaagaaagtatggttgtgagatgaatttatcaaaatattcttaatgcatgggatgtacaatagggtgtatgattaaagggtcttcaatgtaacatt 16358930  T
Q  100 ttc 102  Q
    |||    
T  16358931 ttc 16358933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 33629991 - 33630091
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    ||||||||||||||| ||||||||||||| |||| ||||||||| ||||  || |||||||||||  |||||||||||||||||||||| ||||||||||    
T  33629991 tgaaagagaaagtatagttgtgagatgaaattactaaaatgtccctaatgcatagggtgtacaatgaggtgtatgattaaagggtgttcgtgtaacattt 33630090  T
Q  101 t 101  Q
    |    
T  33630091 t 33630091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 1375641 - 1375542
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| | |||||||||| ||||||||||||| ||| |||||||||||||||||||| |||||||||| |||| ||||||||||||| |||||||    
T  1375641 aagataaagtgtagttgtgagataaatttaccaaaatatccctaatatatggggtgtacaattgggtgtatgaataaaaggtgttcatgtaaaattttcc 1375542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 20148854 - 20148762
Alignment:
Q  9 aaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 101  Q
    ||||| ||||||||||||||| |||||||||| ||| ||||||||| |||||||||| || ||||||| ||||||||||| ||||||||||||    
T  20148854 aaagtgtggttgtgagatgaacttaccaaaatatccctaatatatgaggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttt 20148762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 5755002 - 5754903
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||||||||| |||||||| || |||| || |||| |||||||||||||||||||||    
T  5755002 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatatatgggatgtacaatgggatgtaggaataaaaggtgttcatgtaacattttcc 5754903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 11582865 - 11582766
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| || ||||||||||| || |||| || ||||||||||||||||||||||||||    
T  11582865 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 11582766  T

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Target: chr8; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 29705461 - 29705362
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| ||| |||||| ||| ||||| |||||||||||||| |||||||  | ||||||||||||||||||||||||||    
T  29705461 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaatacatggggtgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 29705362  T

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Target: chr8; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 36743484 - 36743583
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| || ||||||||||| || |||| || ||||||||||||||||||||||||||    
T  36743484 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 36743583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 29800951 - 29801048
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 101  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| |||||||||||||| || ||||||| |||| |||||| ||||||||||||    
T  29800951 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 29801048  T

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Target: chr8; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 42295294 - 42295197
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 101  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| |||| |||||||||  |||||| || ||||||||||||||||||||||||    
T  42295294 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggagtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 42295197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 40528635 - 40528735
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatg-attaaagggtgttcatgtaacattttc 102  Q
    |||||||||| |||||||||||| |||||| |||||||||| |||||||||||||||||||| |||| | || || ||||||||||||||||  ||||||    
T  40528635 aagagaaagtgtggttgtgagataaatttatcaaaatgtccctaatatatggggtgtacaatggggtttgtgaataaaagggtgttcatgtattattttc 40528734  T
Q  103 c 103  Q
    |    
T  40528735 c 40528735  T

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Target: chr8; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 26125734 - 26125637
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 101  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| || ||||||||||| |  ||||||| ||||||||||| ||||||||||||    
T  26125734 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtatgaataaagggtgtttatgtaacatttt 26125637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 42699351 - 42699259
Alignment:
Q  9 aaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 101  Q
    ||||| ||||||||||||||| |||| ||||| ||| ||||| ||  |||||||||| ||||||| || ||||||||||||||||||||||||    
T  42699351 aaagtgtggttgtgagatgaacttacaaaaatatccataatacataaggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 42699259  T

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Target: chr8; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 30660743 - 30660842
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||| ||||||| |||||||||| ||| ||||| || ||||||||||| || ||||  | ||||||||||||||||||||||||||    
T  30660743 aagataaagtgtggttgtaagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtagaaataaagggtgttcatgtaacattttcc 30660842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 31384763 - 31384672
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaa 95  Q
    |||| ||||| ||||||||||||||| |||||||||| | | ||||| ||||||||||||||||  |||| || ||||||||||||||||||    
T  31384763 aagataaagtgtggttgtgagatgaacttaccaaaatattcctaatacatggggtgtacaatagaatgtaagaataaagggtgttcatgtaa 31384672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 42197436 - 42197535
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| || | |||| |||| ||||||| || |||| |||||||||||||||||||||    
T  42197436 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagtgtgtgcaatggggtgtaggaataaatggtgttcatgtaacattttcc 42197535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 30912575 - 30912660
Alignment:
Q  16 ggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 101  Q
    |||||||||||||| ||||||||||  || ||||| |||  ||||||||| ||||||| || ||||||||||||||||||||||||    
T  30912575 ggttgtgagatgaacttaccaaaatacccctaatacatgaagtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 30912660  T

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Target: chr8; HSP #23
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 2165964 - 2166063
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||| ||||||||| |||||||||| ||  ||||| ||||||| |||||| ||||||| || |||| ||||||||||||| |||||||    
T  2165964 aagataaagtgtggttatgagatgaacttaccaaaatatctctaatacatggggtatacaatggggtgtaggaataaatggtgttcatgtaatattttcc 2166063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 2547095 - 2546996
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||| ||||| ||| ||||| ||| |||||||||| | |||||  | ||||| ||||||||||||||||||||    
T  2547095 aagataaagtgtggttgtgagatgaacttactaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcc 2546996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 19386563 - 19386670
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatg-----gggtgtacaatagggtgtatgattaaagggtgttcatgtaa 95  Q
    ||||||||||||||| ||||||||||||||||| |||||  | ||||||  |||     |   ||| |||||||||||||||||||||||||||||||||    
T  19386563 tgaaagagaaagtatagttgtgagatgaatttatcaaaacattcttaatgcatgaaagagaaagtataatagggtgtatgattaaagggtgttcatgtaa 19386662  T
Q  96 cattttcc 103  Q
    ||||||||    
T  19386663 cattttcc 19386670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 45397404 - 45397317
Alignment:
Q  15 tggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 102  Q
    ||||||||||||||| |||| ||||| ||| ||||| || ||||||| ||| ||||||| || ||||||||||||| |||||||||||    
T  45397404 tggttgtgagatgaacttacaaaaatatccctaatacatagggtgtagaatggggtgtaggaataaagggtgttcacgtaacattttc 45397317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 3743870 - 3743773
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 101  Q
    |||| ||||| ||||||||||||||| ||| |||||| | |||||||||||||||||| ||| ||  | |||| ||||||||||  ||| ||||||||    
T  3743870 aagataaagtgtggttgtgagatgaacttatcaaaatatacttaatatatggggtgtataatgggagggatgaataaagggtgtatatggaacatttt 3743773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 9241651 - 9241594
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgta 61  Q
    |||| ||||| ||||||||||||||| |||| ||||| ||| |||||||| |||||||    
T  9241651 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatatatagggtgta 9241594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 249
Target Start/End: Complemental strand, 43892435 - 43892398
Alignment:
Q  212 caccaccacaaaaagcacaattctaagaagcacccggt 249  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  43892435 caccaccacaaaaagcacaattcaaagaggcacccggt 43892398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 35003396 - 35003294
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35003396 tgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgtatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 35003297  T
Q  101 tcc 103  Q
    |||    
T  35003296 tcc 35003294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 48119730 - 48119628
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48119730 tgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 48119631  T
Q  101 tcc 103  Q
    |||    
T  48119630 tcc 48119628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 44112779 - 44112677
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44112779 tgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 44112680  T
Q  101 tcc 103  Q
    |||    
T  44112679 tcc 44112677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 38113193 - 38113295
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38113193 tgaaagagtaagtatggttgtgagatgaatttaccaaaatgtcattaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatataacattt 38113292  T
Q  101 tcc 103  Q
    |||    
T  38113293 tcc 38113295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 38336020 - 38335918
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||  ||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  38336020 tgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatgggatgtacaataaggtgtatgattaaagggtgttcatgtaacattt 38335921  T
Q  101 tcc 103  Q
    |||    
T  38335920 tcc 38335918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 45639730 - 45639832
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  45639730 tgaaagagaaagtatgattgtgagatgaatttaccaaaatatccttaatgtatggggtgtacaataggatgtatgattaaagagtgttcatgtaacattt 45639829  T
Q  101 tcc 103  Q
    |||    
T  45639830 tcc 45639832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 46168485 - 46168383
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||  || |||||||||||||| | |||||||||||||||||||||||||||||    
T  46168485 tgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcattgggtgtacaataggatatatgattaaagggtgttcatgtaacattt 46168386  T
Q  101 tcc 103  Q
    |||    
T  46168385 tcc 46168383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 2 - 103
Target Start/End: Complemental strand, 41065254 - 41065153
Alignment:
Q  2 gaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 101  Q
    |||||||||||||||||||||||||||| ||||||||||| || ||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41065254 gaaagagaaagtatggttgtgagatgaaattaccaaaatgcccctaatgcatggggtgtacaacagggtgtatgattaaagggtgttcatgtaacatttt 41065155  T
Q  102 cc 103  Q
    ||    
T  41065154 cc 41065153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 45427743 - 45427845
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||  |||| ||||||||||||||||||||||||| ||| ||||||||||||||    
T  45427743 tgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggagtgtacaatagggtgtatgattaaaaggtattcatgtaacattt 45427842  T
Q  101 tcc 103  Q
    |||    
T  45427843 tcc 45427845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 45705927 - 45705825
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||  |||| |||||||||||  |||||||||||||||||||||| ||||||||    
T  45705927 tgaaagagaaagtatggttgtgagatgaatttatcaaaatgtccataatgcatggagtgtacaatagaatgtatgattaaagggtgttcatataacattt 45705828  T
Q  101 tcc 103  Q
    |||    
T  45705827 tcc 45705825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 35000111 - 35000213
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    |||||||||||||||||||||||||| |||||| |||||||||| ||||| |||  || |||||||| ||||||||||||| ||||||||||||||||||    
T  35000111 tgaaagagaaagtatggttgtgagataaatttatcaaaatgtccctaatacatgaagtatacaatagagtgtatgattaaaaggtgttcatgtaacattt 35000210  T
Q  101 tcc 103  Q
    |||    
T  35000211 tcc 35000213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 37814877 - 37814778
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||| |||||||||||||||| ||||||||| ||||||||||||||  | ||||||| ||||||||||| ||||||||||||||    
T  37814877 aagataaagtgtggttgtgaaatgaatttaccaaaatatccttaatacatggggtgtacaatgagatgtatgaataaagggtgtttatgtaacattttcc 37814778  T

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Target: chr1; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 43571087 - 43571186
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| ||||||||||||||  |||||| || ||||||||||||||||||||||||||    
T  43571087 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 43571186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 26585564 - 26585462
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    |||||||||||||||| ||| ||||||||||||| ||||| ||||||||  |||||||||||||||  ||||||||||||||  ||||||| ||||||||    
T  26585564 tgaaagagaaagtatgattgcgagatgaatttactaaaatatccttaatgcatggggtgtacaatatagtgtatgattaaagaatgttcatctaacattt 26585465  T
Q  101 tcc 103  Q
    |||    
T  26585464 tcc 26585462  T

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Target: chr1; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 2497568 - 2497660
Alignment:
Q  9 aaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 101  Q
    ||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||| |  ||||||| |||| |||||| ||||||||||||    
T  2497568 aaagtgtggttgtgagatgaacttaccaaaatatccttaatatatggggtgtacaatggaatgtatgaataaatggtgtttatgtaacatttt 2497660  T

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Target: chr1; HSP #16
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 5489875 - 5489776
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| || ||||||||||| || |||| || ||||||||||||||||||||||||||    
T  5489875 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 5489776  T

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Target: chr1; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 23989524 - 23989624
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatg-attaaagggtgttcatgtaacattttc 102  Q
    |||| ||||| |||||||||||| ||||||||||||| ||| ||||| || |||| |||||| | ||||||| || ||||||||||||||||||||||||    
T  23989524 aagataaagtgtggttgtgagataaatttaccaaaatatccctaatacatagggtatacaattgagtgtatgaataaaagggtgttcatgtaacattttc 23989623  T
Q  103 c 103  Q
    |    
T  23989624 c 23989624  T

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Target: chr1; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 14427394 - 14427347
Alignment:
Q  56 ggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14427394 ggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 14427347  T

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Target: chr1; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 48498963 - 48499062
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| ||| |||||||||| | |||||  | ||||| ||||||||||||||||||||    
T  48498963 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcc 48499062  T

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Target: chr1; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 750306 - 750405
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||| ||||||||||||| |||||| ||| | ||| |||||||||||||| ||||||| ||   ||||||||||| ||||||||||||    
T  750306 aagataaagtgtggttttgagatgaatttatcaaaatatccctgatacatggggtgtacaatggggtgtaggaaataagggtgttcacgtaacattttcc 750405  T

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Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 24769500 - 24769599
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||| | ||| |||||||||| ||| ||||| |||||||||||||| | |||||  | |||| |||||||||| ||||||||||    
T  24769500 aagataaagtgtggttgtgataagaacttaccaaaatatccctaatacatggggtgtacaatggagtgtagaaataaaaggtgttcatgaaacattttcc 24769599  T

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Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 7447924 - 7447828
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 101  Q
    |||| ||||| ||||||||||||||| ||| |||||| ||  ||||| ||||| |||||||| || |||| || |||||| |||||||||||||||||    
T  7447924 aagataaagtgtggttgtgagatgaacttatcaaaatatctgtaatacatggg-tgtacaatgggatgtaggaataaaggatgttcatgtaacatttt 7447828  T

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Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 4401427 - 4401329
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatg-attaaagggtgttcatgtaacatttt 101  Q
    |||| ||||| ||||||||||||||| |||||||||| ||  ||||| ||||||||||||||   ||||| | || |||| ||||||||||| ||||||    
T  4401427 aagataaagtgtggttgtgagatgaacttaccaaaatatctctaatacatggggtgtacaatgaagtgtaggaataaaagagtgttcatgtatcatttt 4401329  T

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Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 50448272 - 50448360
Alignment:
Q  15 tggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    ||||||| ||||||| |||| ||||| ||| ||||| ||  |||||||||| | |||||  | ||||| ||||||||||||||||||||    
T  50448272 tggttgtaagatgaacttacaaaaatatccctaatacataaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcc 50448360  T

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Target: chr3 (Bit Score: 91; Significance: 6e-44; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 25996370 - 25996268
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  25996370 tgaaagagaaaatatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaataagatgtatgattaaagggtgttcatgtaacattt 25996271  T
Q  101 tcc 103  Q
    |||    
T  25996270 tcc 25996268  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 9434226 - 9434124
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9434226 tgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagagtgtatgattaaagggtgttcatgtaacattt 9434127  T
Q  101 tcc 103  Q
    |||    
T  9434126 tcc 9434124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 10457890 - 10457992
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10457890 tgaaagagaaagtatggttgtgagataaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaaaggtgttcatgtaacattt 10457989  T
Q  101 tcc 103  Q
    |||    
T  10457990 tcc 10457992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 4190263 - 4190365
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||  ||||| ||  |||||||||||||||||||||||||||||||||||||||||||||    
T  4190263 tgaaagagaaagtatggttgtgagatgaatttaccaaaatatctctaatacataaggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 4190362  T
Q  101 tcc 103  Q
    |||    
T  4190363 tcc 4190365  T

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Target: chr3; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 51757695 - 51757593
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    ||||||||||||||||||||||||||||| |||| ||||||||| ||||  ||| ||||||||||||||||||||||||||||||||| |||||| ||||    
T  51757695 tgaaagagaaagtatggttgtgagatgaaattactaaaatgtccataatgcatgaggtgtacaatagggtgtatgattaaagggtgtttatgtaatattt 51757596  T
Q  101 tcc 103  Q
    |||    
T  51757595 tcc 51757593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 52627975 - 52628077
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    |||||||||||||||| ||||||||||||||||||||||| | ||||||  ||| ||||||||||||| ||||||||||||||||||||| |||||||||    
T  52627975 tgaaagagaaagtatgattgtgagatgaatttaccaaaatatacttaatgcatgaggtgtacaataggatgtatgattaaagggtgttcacgtaacattt 52628074  T
Q  101 tcc 103  Q
    |||    
T  52628075 tcc 52628077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 34791931 - 34791829
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    ||||||||||||||||||||||||||||| |||  ||||||||| ||||  ||| ||| ||||||| |||||||||||||||||||||||||||||||||    
T  34791931 tgaaagagaaagtatggttgtgagatgaaattattaaaatgtccctaatgcatgaggtttacaatatggtgtatgattaaagggtgttcatgtaacattt 34791832  T
Q  101 tcc 103  Q
    |||    
T  34791831 tcc 34791829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 45126934 - 45127028
Alignment:
Q  9 aaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    ||||| ||||||||||||||| |||||||||| ||| ||||| |||||||||||||| || ||||||| ||||||||||| ||||||||||||||    
T  45126934 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaagggtgtttatgtaacattttcc 45127028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 42100776 - 42100688
Alignment:
Q  15 tggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    ||||||||||||||| |||||||||| ||| ||||| ||||||||||||||  |||||| || ||||||||||||||||||||||||||    
T  42100776 tggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 42100688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 40808964 - 40808865
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| |||||||||||||| ||||||| || |||| |||||| ||||||||||||||    
T  40808964 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatggggtgtaggaataaatggtgttgatgtaacattttcc 40808865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 46941152 - 46941053
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| ||||||||||||||  | |||| || ||||||||||||||||||||||||||    
T  46941152 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgagatgtaggaataaagggtgttcatgtaacattttcc 46941053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 54237195 - 54237097
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 102  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| || ||||||||||| || |||| || |||||||||||||||||||||||||    
T  54237195 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttc 54237097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 24688403 - 24688502
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| || ||||||||||| | |||||  | ||||||||||||||||||||||||||    
T  24688403 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggagtgtagaaataaagggtgttcatgtaacattttcc 24688502  T

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Target: chr3; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 25413780 - 25413681
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||| ||||| ||| ||||| ||  |||||||||| ||||||| || ||||||||||||||||||||||||||    
T  25413780 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacataaggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 25413681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 36150229 - 36150130
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| | ||| || ||||||| ||| |||||||||| |||||||| |||||||||||||||||    
T  36150229 aagataaagtgtggttgtgagatgaacttaccaaaatatccctgatacatagggtgtataatggggtgtatgaataaagggtattcatgtaacattttcc 36150130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 54246149 - 54246248
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||| ||||| ||  ||||| || ||||||||||| ||||||| || ||||||||||||||||||||||||||    
T  54246149 aagataaagtgtggttgtgagatgaacttacaaaaatatctctaatacatagggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 54246248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 40480848 - 40480750
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 102  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| || || |||||||| |||  ||||| |||||||||||||||||||||||||    
T  40480848 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacataggatgtacaatggggcatatgaataaagggtgttcatgtaacattttc 40480750  T

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Target: chr3; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 42394420 - 42394518
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 102  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| || ||||||||||| |  |||| || |||||||||||||||||||||||||    
T  42394420 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttc 42394518  T

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Target: chr3; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 27748662 - 27748565
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 101  Q
    |||| ||||||| ||||||||||||| |||||||||| ||| ||||| ||  |||||| |||  ||||||||| |||| |||||||||||||||||||    
T  27748662 aagataaagtattgttgtgagatgaacttaccaaaatatccctaatacataaggtgtataatgaggtgtatgaataaaaggtgttcatgtaacatttt 27748565  T

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Target: chr3; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 53581859 - 53581956
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 101  Q
    |||| ||||| ||||||||||||||| ||| |||||| ||| ||||| || || |||||||| | |||||||| ||||| ||||||||||||||||||    
T  53581859 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaatacataggatgtacaatggagtgtatgaataaagagtgttcatgtaacatttt 53581956  T

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Target: chr3; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 53273684 - 53273784
Alignment:
Q  3 aaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 102  Q
    ||||| ||||||||||||||||||||| |||||||||| ||| ||||| ||||| ||||||||  ||| || || |||| | ||||||| ||||||||||    
T  53273684 aaagataaagtatggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtataggaataaatgatgttcatataacattttc 53273783  T
Q  103 c 103  Q
    |    
T  53273784 c 53273784  T

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Target: chr3; HSP #22
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 47191027 - 47191125
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| ||| |||||| ||  ||||| ||||| ||||||||  |||||| || ||||||||||||||||||||||||||    
T  47191027 aagataaagtgtggttgtgagatgaacttatcaaaatatctctaatacatggg-tgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 47191125  T

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Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 29558249 - 29558330
Alignment:
Q  18 ttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatt 99  Q
    |||||||||||||||||||| || | | |||||||| |||||||||||  | ||||||| |||||||||||||| |||||||    
T  29558249 ttgtgagatgaatttaccaatatattcctaatatatagggtgtacaatgagatgtatgaataaagggtgttcatataacatt 29558330  T

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Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 51249407 - 51249323
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgtt 88  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||  ||| |||||| ||| || ||  ||| |||||||||||    
T  51249407 aagagaaagtgtggttgtgagatgaatttaccaaaatatccttaatgcatgaggtgtataatgggttgggtgaataaagggtgtt 51249323  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 52629927 - 52629870
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgta 61  Q
    |||| ||||| ||||||||||||||| |||| ||||| ||||||||| || |||||||    
T  52629927 aagataaagtgtggttgtgagatgaacttacaaaaatatccttaatacatagggtgta 52629870  T

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Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 33242505 - 33242403
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  33242505 tgaaagagaaagtatgtttgtgagatgaatttaccaaaatgtccttaatacatggggtgtacaataaggtgtatgattaaatggtgttcatgtaacattt 33242406  T
Q  101 tcc 103  Q
    |||    
T  33242405 tcc 33242403  T

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Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 27441644 - 27441544
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| || || |||||||||||||||||||||||||||||||||||||||||||    
T  27441644 tgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatacataggatgtacaatagggtgtatgattaaagggtgttcatgtaacattt 27441545  T
Q  101 t 101  Q
    |    
T  27441544 t 27441544  T

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Target: chr6; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 33254013 - 33253913
Alignment:
Q  3 aaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 102  Q
    ||||| |||||||| |||||||||||||||||||| |||||| ||||  ||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  33254013 aaagataaagtatgattgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacattttc 33253914  T
Q  103 c 103  Q
    |    
T  33253913 c 33253913  T

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Target: chr6; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 3213499 - 3213400
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||  | ||||||| ||||||||||| ||||||||||||||    
T  3213499 aagataaagtatggttgtgaaatgaatttaccaaaatatccttaatacatggggtgtacaatgagatgtatgaataaagggtgtttatgtaacattttcc 3213400  T

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Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 13743222 - 13743321
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| |||||||||||||| || ||||||| |||| |||||||||||||||||||||    
T  13743222 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacattttcc 13743321  T

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Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 13748722 - 13748821
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| |||||||||||||| || ||||||| |||| |||||||||||||||||||||    
T  13748722 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacattttcc 13748821  T

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Target: chr6; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 24203993 - 24204085
Alignment:
Q  9 aaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 101  Q
    ||||| ||||||||||||||| |||||||||| ||| ||||| |||| ||||||||||||||||| || |||| |||||||||||||||||||    
T  24203993 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggagtgtacaatagggtgtaggaataaatggtgttcatgtaacatttt 24204085  T

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Target: chr6; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 7273336 - 7273435
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| || |||||||||||| |||||||||| ||  ||||| ||||||||||||||| |||||| || ||||||||||||||||||||||||||    
T  7273336 aagataaagtgtgattgtgagatgaacttaccaaaatatctctaatacatggggtgtacaataaggtgtaggaataaagggtgttcatgtaacattttcc 7273435  T

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Target: chr6; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 9698334 - 9698433
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| || ||||||||||| || |||| || ||||||||||||||||||||||||||    
T  9698334 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 9698433  T

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Target: chr6; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 26670010 - 26670109
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| ||| ||||||||||  |||||| || ||||||||||||||||||||||||||    
T  26670010 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 26670109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 21293678 - 21293777
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||| |||||||||||||||| ||||||||| |||||||||||| |    ||||||| ||||||||||| ||||||||||||||    
T  21293678 aagataaagtgtggttgtgaaatgaatttaccaaaatatccttaatacatggggtgtacagtgaaatgtatgaataaagggtgtttatgtaacattttcc 21293777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 26466898 - 26466799
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| ||||||||||  || ||||| |||| ||||||||| ||||||| || ||||||||||| ||||||||||||||    
T  26466898 aagataaagtgtggttgtgagatgaacttaccaaaataaccctaatacatggagtgtacaatggggtgtaggaataaagggtgtttatgtaacattttcc 26466799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 30014442 - 30014343
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||||||||||||||||||| |||||||||| | | ||||| ||||| |||| ||| || |||| || ||||||||||||||||||||||||||    
T  30014442 aagataaagtatggttgtgagatgaacttaccaaaatatgcctaatacatgggatgtataatgggatgtaggaataaagggtgttcatgtaacattttcc 30014343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 7292846 - 7292747
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| || ||||||| |||  ||||||||| |||| ||||||| |||||||||||||    
T  7292846 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtataatgaggtgtatgaataaatggtgttcttgtaacattttcc 7292747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 21280028 - 21279929
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| |||||||||||||||||||||||||| ||| ||||| ||||| ||| |||| |  ||||  | ||||||||||||||||||||||||||    
T  21280028 aagataaagtgtggttgtgagatgaatttaccaaaatatccctaatacatgggatgtgcaatggaatgtagaaataaagggtgttcatgtaacattttcc 21279929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 7367643 - 7367549
Alignment:
Q  9 aaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    ||||| ||||||||||||||| |||||||||| ||| ||||| ||||| ||||||||  ||||||||| |||| | ||||||| |||||||||||    
T  7367643 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtgtatgaataaatgatgttcatataacattttcc 7367549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 31109220 - 31109322
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    ||||||||||| | |||| || || |||||||| |||||| ||| || |  |||||||||| ||| || |||||||||||||||||||||||||||||||    
T  31109220 tgaaagagaaaatgtggtcgtaagttgaatttatcaaaatatccctagtgcatggggtgtataatgggatgtatgattaaagggtgttcatgtaacattt 31109319  T
Q  101 tcc 103  Q
    |||    
T  31109320 tcc 31109322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 30736081 - 30735984
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 101  Q
    |||| ||||| || |||||||||||| |||||||||| ||  ||||| ||| |||||||||| ||||||| || ||||  ||||||||||||||||||    
T  30736081 aagataaagtgtgattgtgagatgaacttaccaaaatatcactaatacatgaggtgtacaatggggtgtaggaataaaaagtgttcatgtaacatttt 30735984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 17619150 - 17619252
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17619150 tgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaaaggtgttcatgtaacattt 17619249  T
Q  101 tcc 103  Q
    |||    
T  17619250 tcc 17619252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 712062 - 711960
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||    
T  712062 tgaaagagaaagtatgtttgtgagatgaatttaccaaaatatccttaatgcatagggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 711963  T
Q  101 tcc 103  Q
    |||    
T  711962 tcc 711960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 32728459 - 32728357
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32728459 tgaaagagaaagtatgattgtgagatgaatttactaaaatgtccttaatgcatggggtgtacaatagggtgtatgattaaaggatgttcatgtaacattt 32728360  T
Q  101 tcc 103  Q
    |||    
T  32728359 tcc 32728357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 55272374 - 55272476
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  55272374 tgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagagtgtatgattaaaggatgttcatgtaacattt 55272473  T
Q  101 tcc 103  Q
    |||    
T  55272474 tcc 55272476  T

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Target: chr4; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 960868 - 960970
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    |||||||||||||| | || | |||||||||||||||||||||| |||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  960868 tgaaagagaaagtacgattataagatgaatttaccaaaatgtccctaatgtatagggtgtacaatagagtgtatgattaaagggtgttcatgtaacattt 960967  T
Q  101 tcc 103  Q
    |||    
T  960968 tcc 960970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 3756252 - 3756344
Alignment:
Q  9 aaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 101  Q
    |||||||| ||||||||| ||||||| ||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3756252 aaagtatgattgtgagataaatttactaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 3756344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 35037106 - 35037007
Alignment:
Q  2 gaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 101  Q
    |||||| ||| |||||||||||||||||||||||||||| ||||||||  |||||||||||||||| ||||||| |||||||||| ||||||||||||||    
T  35037106 gaaagaaaaaatatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagagtgtatggttaaagggtgctcatgtaacatttt 35037007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 46827704 - 46827806
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    ||||||||||| |||| ||||||||| |||||||||||| || ||||||  || ||||||||||||| ||||||||||||||||||||||||||||||||    
T  46827704 tgaaagagaaaatatgtttgtgagataaatttaccaaaacgttcttaatgcattgggtgtacaatagagtgtatgattaaagggtgttcatgtaacattt 46827803  T
Q  101 tcc 103  Q
    |||    
T  46827804 tcc 46827806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 48435577 - 48435679
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    ||||||| |||||||| |||||||||||||||||||| |||||| ||||  ||||||||||||||||||||| |||||||| ||||||||||||||| ||    
T  48435577 tgaaagataaagtatgattgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacactt 48435676  T
Q  101 tcc 103  Q
    |||    
T  48435677 tcc 48435679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 19880056 - 19879987
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggt 70  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19880056 tgaaagagaaagtatgattgtgagatgaatttaccaaaatgtccataatatatggggtgtacaatagggt 19879987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 38851615 - 38851515
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||  |||| ||||||| || | |||||||||||||| | ||||||||||||||    
T  38851615 tgaaagagaaagtatggttgtgagatgaatttatcaaaatgtccataatgcatggagtgtacattatgatgtatgattaaaggatattcatgtaacattt 38851516  T
Q  101 t 101  Q
    |    
T  38851515 t 38851515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 28982835 - 28982922
Alignment:
Q  16 ggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||||||||||||| |||||||||| ||| ||||||||||| ||||||||||||||||  | ||||||||||||||||||||||||||    
T  28982835 ggttgtgagatgaacttaccaaaatatccctaatatatgggatgtacaatagggtgtagaaataaagggtgttcatgtaacattttcc 28982922  T

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Target: chr4; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 28988572 - 28988473
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||||||||| ||||| ||||||||||||| |||||||||| || |  ||||||||||||||  ||||||||| ||||||||||||||||||||||||||    
T  28988572 aagagaaagtgtggttatgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaagggtgttcatgtaacattttcc 28988473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 23036079 - 23035980
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||| ||||| ||| |||||||| ||||||||||||||||||| || ||||||  ||||||||||||||||||    
T  23036079 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatatatagggtgtacaatagggtgtaggaataaaggaggttcatgtaacattttcc 23035980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 33703240 - 33703141
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| ||||||||||||||| | ||||  | ||||||||||||||||||||||||||    
T  33703240 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaataagatgtagaaataaagggtgttcatgtaacattttcc 33703141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 27864658 - 27864564
Alignment:
Q  9 aaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    ||||| ||||||||||||||| |||||||||| ||| ||||| |||||||||||||| || ||||||| |||| |||||| ||||||||||||||    
T  27864658 aaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacattttcc 27864564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 27893843 - 27893940
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 101  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| |||||||||||||| || ||||||| |||| |||||| ||||||||||||    
T  27893843 aagataaagtgtggttgtgagatgaaattaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 27893940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 1771278 - 1771366
Alignment:
Q  15 tggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    ||||||||||||||| ||| |||||| ||  ||||| |||||||||||||| ||||||| || ||||||||||||||||||||||||||    
T  1771278 tggttgtgagatgaacttatcaaaatatctctaatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 1771366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 55966358 - 55966446
Alignment:
Q  15 tggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    ||||||||||||||| |||||||||| ||| ||||| ||||| |||||||| || ||||||| ||||||||||| ||||||||||||||    
T  55966358 tggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgggatgtatgaataaagggtgtttatgtaacattttcc 55966446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 36004114 - 36004174
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgta 61  Q
    |||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||    
T  36004114 tgaaagagaaagtatggttgtgagataaatttatcaaaatgtccctaatatatggggtgta 36004174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 49229684 - 49229764
Alignment:
Q  23 agatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||||||||||||| ||| ||||||||  |||  ||||||||||||||||||||||||||| ||||||| |||||||||||    
T  49229684 agatgaatttaccagaatatccttaatgcatgaagtgtacaatagggtgtatgattaaaggatgttcatataacattttcc 49229764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 25051792 - 25051693
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| || |||||||||||| |||||||||| ||| ||||| || ||||||||||| ||||||| || ||||| |||||||||| |||||||||    
T  25051792 aagataaagtgtgattgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggggtgtaggaataaagtgtgttcatgtgacattttcc 25051693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 27316714 - 27316813
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||| ||||||||| |||||||||| ||||||||| |||||||||| |||  |||||| || |||||||||||| | |||||||||||    
T  27316714 aagataaagtgtggttatgagatgaacttaccaaaatatccttaatacatggggtgtataatgaggtgtaggaataaagggtgttcgtttaacattttcc 27316813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 27550408 - 27550309
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||| ||||||| |||||||||| ||| ||||| ||| |||||||||| | |||||  | ||||||||||||||||||||||||||    
T  27550408 aagataaagtgtggttgtaagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagggtgttcatgtaacattttcc 27550309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 41878505 - 41878407
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 102  Q
    ||||||| || ||||||||||||||| ||| |||||| ||| ||||  || |||||||||||  ||||||||| ||||| |||||||||||||||||||    
T  41878505 aagagaaggtttggttgtgagatgaacttatcaaaatatccctaatggatagggtgtacaatgaggtgtatgaataaagagtgttcatgtaacattttc 41878407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 48463456 - 48463550
Alignment:
Q  9 aaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    ||||||||||||||||||||| |||||||||| ||| ||||| ||||| ||||||||    ||||||| |||| |||||| ||||||||||||||    
T  48463456 aaagtatggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaaatgtatgaataaatggtgtttatgtaacattttcc 48463550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 31681001 - 31680904
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 101  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||||| |||||||||||| |  ||||||| |||| |||||| | ||||||||||    
T  31681001 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatatacggggtgtacaatggaatgtatgaataaatggtgtttacgtaacatttt 31680904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 41327544 - 41327641
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 101  Q
    |||||||||| ||| |||||||||||||||||||||||||| || |  ||  |||||||||| |||||| ||| ||||||||||  ||||||||||||    
T  41327544 aagagaaagtgtggatgtgagatgaatttaccaaaatgtccgtagtgcataaggtgtacaatggggtgtgtgaataaagggtgtctatgtaacatttt 41327641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 35017831 - 35017733
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| || || ||||||||||||||  | | || || ||||||||||||||||||||||||||    
T  35017831 aagataaagtgtggttgtgagatgaacttaccaaaatatcccta-tacatggggtgtacaatgagatataggaataaagggtgttcatgtaacattttcc 35017733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 41848070 - 41847971
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||||||||| |||||||| ||||||||| ||||||||||  ||||  ||||||||||||||  ||||| |||  ||||| ||||| |||||||||||||    
T  41848070 aagagaaagtgtggttgtgcgatgaatttgccaaaatgtctctaatgcatggggtgtacaatgaggtgtgtgaaaaaaggatgttcttgtaacattttcc 41847971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 45490314 - 45490413
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| |||||||||||||||||||| ||| | ||| ||||| ||| |||||||||| || ||||| | ||||  ||||||||||||||||||||    
T  45490314 aagataaagtgtggttgtgagatgaatttactaaagtatccctaatacatgaggtgtacaattggatgtataaataaaatgtgttcatgtaacattttcc 45490413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 43514698 - 43514784
Alignment:
Q  15 tggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 101  Q
    ||||||||||||||| ||||||||||  || ||||| |||  ||||||||| | ||||| || ||||||||||||||||||||||||    
T  43514698 tggttgtgagatgaacttaccaaaataaccctaatacatgaagtgtacaatggagtgtaggaataaagggtgttcatgtaacatttt 43514784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 43949802 - 43949900
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatg-attaaagggtgttcatgtaacatttt 101  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| ||||||||||||||  |||| | | || |||||||||||||||| ||||||    
T  43949802 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgcaggaataaaagggtgttcatgtatcatttt 43949900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 12497055 - 12496956
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| || |||| ||||||| |||||||||| ||  ||||| ||||| |||||||| | ||||| || |||||||||||||| |||||||||||    
T  12497055 aagataaagtgtgattgtaagatgaacttaccaaaatatctctaatacatgggatgtacaatggagtgtaggaataaagggtgttcatataacattttcc 12496956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 39631200 - 39631102
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatg-attaaagggtgttcatgtaacatttt 101  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| ||| ||||||||||  |||||| | || |||||| ||||||||| ||||||    
T  39631200 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaaagggggttcatgtatcatttt 39631102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 23204779 - 23204875
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    |||| ||||| ||||||||| ||||| |||| ||||| ||| ||||| || || |||||||| || |||| || ||||| |||||||||||||||||    
T  23204779 aagataaagtgtggttgtgacatgaacttacaaaaatatccctaatacataggatgtacaatgggatgtaggaataaagagtgttcatgtaacattt 23204875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 36004168 - 36004204
Alignment:
Q  67 gggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    ||||||||||||||||||| |||||||||||||||||    
T  36004168 gggtgtatgattaaagggtattcatgtaacattttcc 36004204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 47210086 - 47209992
Alignment:
Q  130 aaattaagccgcctgaacacctttagccaaaccttaaacaccacatcacaatgcaagaagatgtgagaagaactttcctcaccaccaccacaaaa 224  Q
    ||||| |||| | |||||||||||  |||  |||| | |||||| |||||||||||||| || |||| |||| |||||||||||||  |||||||    
T  47210086 aaattgagccacatgaacaccttttcccactccttcatcaccacctcacaatgcaagaaaatatgagcagaagtttcctcaccacctgcacaaaa 47209992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 43114659 - 43114557
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43114659 tgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 43114560  T
Q  101 tcc 103  Q
    |||    
T  43114559 tcc 43114557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 966832 - 966934
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    |||||||||||||||| |||||||||||||||||||||| || ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  966832 tgaaagagaaagtatgtttgtgagatgaatttaccaaaacgttcttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 966931  T
Q  101 tcc 103  Q
    |||    
T  966932 tcc 966934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 18491807 - 18491705
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18491807 tgaaagagtaagtatggttgtgagatgaatttaccaaaatgttcttaatgcatgaggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 18491708  T
Q  101 tcc 103  Q
    |||    
T  18491707 tcc 18491705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 11825652 - 11825752
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    |||||||||||||||| |||||||||||| |||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11825652 tgaaagagaaagtatgattgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 11825751  T
Q  101 t 101  Q
    |    
T  11825752 t 11825752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 41281972 - 41282072
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    ||||||||||||||||||||||||||||| ||| |||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41281972 tgaaagagaaagtatggttgtgagatgaaattatcaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 41282071  T
Q  101 t 101  Q
    |    
T  41282072 t 41282072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 12415458 - 12415560
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    |||||||||||||||||||||||||| || |||||||||||||| ||||  ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12415458 tgaaagagaaagtatggttgtgagataaaattaccaaaatgtccctaatgcatggggtgtacaataaggtgtatgattaaagggtgttcatgtaacattt 12415557  T
Q  101 tcc 103  Q
    |||    
T  12415558 tcc 12415560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 12427518 - 12427620
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    |||||||||||||||||||||||||| || |||||||||||||| ||||  ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12427518 tgaaagagaaagtatggttgtgagataaaattaccaaaatgtccctaatgcatggggtgtacaataaggtgtatgattaaagggtgttcatgtaacattt 12427617  T
Q  101 tcc 103  Q
    |||    
T  12427618 tcc 12427620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 16804070 - 16803968
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    ||||||||||||||||||||||||||||| ||| |||||||||| ||||  ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16804070 tgaaagagaaagtatggttgtgagatgaaattatcaaaatgtccctaatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaacattt 16803971  T
Q  101 tcc 103  Q
    |||    
T  16803970 tcc 16803968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 16843352 - 16843250
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    ||||||||||||||||||||||||||||| ||| |||||||||| ||||  ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16843352 tgaaagagaaagtatggttgtgagatgaaattatcaaaatgtccctaatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaacattt 16843253  T
Q  101 tcc 103  Q
    |||    
T  16843252 tcc 16843250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 3 - 101
Target Start/End: Original strand, 4299420 - 4299518
Alignment:
Q  3 aaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 101  Q
    |||||| ||||||| |||||||||||||||||||||||||| |||||  |||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  4299420 aaagagtaagtatgattgtgagatgaatttaccaaaatgtcattaatgcatggagtgtacaatagggtgtatgattaaagggtgttcatataacatttt 4299518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 14285778 - 14285676
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    ||||||||||||||||  | |||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||  ||||| ||||    
T  14285778 tgaaagagaaagtatgactctgagatgaatttaccaaaatatctttaatatatagggtgtacaatagggtgtatgattaaagggtgtttgtgtaatattt 14285679  T
Q  101 tcc 103  Q
    |||    
T  14285678 tcc 14285676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 34895739 - 34895841
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    ||||||| |||||||| |||||||||||||||||||| |||||| ||||  ||||||||||||||||||||| |||||||| ||||||||||||||| ||    
T  34895739 tgaaagataaagtatgattgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacactt 34895838  T
Q  101 tcc 103  Q
    |||    
T  34895839 tcc 34895841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 34817777 - 34817875
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 102  Q
    |||||||||| |||||||||||||||||||||||||||| | || |  ||||||||||||||  ||||| ||| |||||||||||||||||||||||||    
T  34817777 aagagaaagtgtggttgtgagatgaatttaccaaaatgtgcgtagtgcatggggtgtacaatgaggtgtgtgaataaagggtgttcatgtaacattttc 34817875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 1750513 - 1750414
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||| ||||| ||| ||||| || ||||||||||| ||||||| || ||||||||||||||||||||||||||    
T  1750513 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacatagggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 1750414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 4764727 - 4764826
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| |||||||||||||||||||||||||| |   ||||| |||||||||||||||||||||| || |||| |||||| ||||||||||||||    
T  4764727 aagataaagtgtggttgtgagatgaatttaccaaaatatttataatacatggggtgtacaatagggtgtaggaataaatggtgttgatgtaacattttcc 4764826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 6518484 - 6518566
Alignment:
Q  18 ttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 101  Q
    |||||||||||| |||||||||||||| ||||  |||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  6518484 ttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagagtgtatgattaaa-ggtgttcatgtaacatttt 6518566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 30838731 - 30838632
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| ||||||||||||||| | ||||  | ||||||||||||||||||||||||||    
T  30838731 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaataagatgtagaaataaagggtgttcatgtaacattttcc 30838632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 12302254 - 12302353
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||| ||||| ||| ||||| || ||||||||||| |||||||  | ||||||||||||||||||||||||||    
T  12302254 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacatagggtgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 12302353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 13780736 - 13780835
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||||||||| ||||||||||||||||||| |||||| ||| |||| |||||||||||||||  ||||| ||| ||||  ||||| ||||||||||||||    
T  13780736 aagagaaagtgtggttgtgagatgaatttatcaaaatatccctaatgtatggggtgtacaatgaggtgtgtgaataaaatgtgttgatgtaacattttcc 13780835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 16096846 - 16096747
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| |||||||||||| || | |||||||| ||| ||||| |||||||||| ||| ||||||| || ||||||||||||||||||||||||||    
T  16096846 aagataaagtgtggttgtgagattaactcaccaaaatatccctaatacatggggtgtataatggggtgtaggaataaagggtgttcatgtaacattttcc 16096747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 19047256 - 19047158
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 102  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| || ||||||||||| |  |||| || |||||||||||||||||||||||||    
T  19047256 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttc 19047158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 12531661 - 12531744
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggt 85  Q
    ||||||||||||||||||||||||||||||||||||||| | || ||||   || |||||||||| |||||||||||||||||||    
T  12531661 tgaaagagaaagtatggttgtgagatgaatttaccaaaa-gcccataatgcttgaggtgtacaattgggtgtatgattaaagggt 12531744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 4451948 - 4452026
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgatta 79  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||  ||  ||||||||||| | ||||||||||    
T  4451948 tgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaatgcatatggtgtacaataagatgtatgatta 4452026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 43490402 - 43490499
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 101  Q
    |||| ||||| ||||| ||||||||| |||||||||| ||| ||||| || | ||||||||| || |||| || ||||||||||||||||||||||||    
T  43490402 aagataaagtgtggttatgagatgaacttaccaaaatatccctaatacatagagtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 43490499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 7070504 - 7070418
Alignment:
Q  15 tggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 101  Q
    ||||||| ||||||||||| ||||||||||  |||| |||| |  |||||| || ||||||| ||||||||||||||||||||||||    
T  7070504 tggttgtaagatgaatttatcaaaatgtccccaataaatggaggttacaatgggatgtatgaataaagggtgttcatgtaacatttt 7070418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 8896587 - 8896681
Alignment:
Q  7 agaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 101  Q
    ||||||| || ||||||||||||||||||||||| | | || | ||| ||||||||||| |  ||| ||| ||||||||||||||||||||||||    
T  8896587 agaaagtgtgattgtgagatgaatttaccaaaatattcctattgtatagggtgtacaatggaatgtgtgaataaagggtgttcatgtaacatttt 8896681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 43335764 - 43335863
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| ||||| ||||| ||||||||  |||||| || |||| | ||||||| |||||||||||    
T  43335764 aagataaagtgtagttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtgtaggaataaatgatgttcatataacattttcc 43335863  T

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Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 33229381 - 33229303
Alignment:
Q  24 gatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatg-attaaagggtgttcatgtaacatttt 101  Q
    |||||| |||||||||| ||| ||||| ||||||||||||||  |||||| | || |||||||||||||||| ||||||    
T  33229381 gatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaaagggtgttcatgtatcatttt 33229303  T

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Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 42026865 - 42026767
Alignment:
Q  7 agaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaa--gggtgttcatgtaacattttcc 103  Q
    ||||||| | |||||||||||||||| ||||||| ||| ||||    ||| |||||||| |  ||||||| ||||  ||||||||||||||||||||||    
T  42026865 agaaagtgtagttgtgagatgaatttgccaaaatatccctaatgcgcgggatgtacaatggaatgtatgaataaattgggtgttcatgtaacattttcc 42026767  T

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Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 42849864 - 42849916
Alignment:
Q  9 aaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgta 61  Q
    ||||| ||||||||||||||| ||| |||||| ||| ||||| ||||||||||    
T  42849864 aaagtgtggttgtgagatgaacttatcaaaatatccctaatacatggggtgta 42849916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 42849910 - 42849946
Alignment:
Q  67 gggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    ||||||| || ||||||||||||||||||||||||||    
T  42849910 gggtgtaggaataaagggtgttcatgtaacattttcc 42849946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 45717 - 45817
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| || || |||||||||||||||||||||||||||||||||||||||||||    
T  45717 tgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatacataggatgtacaatagggtgtatgattaaagggtgttcatgtaacattt 45816  T
Q  101 t 101  Q
    |    
T  45817 t 45817  T

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Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 31513389 - 31513287
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  31513389 tgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtatacaatagggtgtatgattaaagagtgttcatgtaacattt 31513290  T
Q  101 tcc 103  Q
    |||    
T  31513289 tcc 31513287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 40237021 - 40236919
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    ||||||||||| ||||||||||||||||| |||||||||||||| ||||  ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  40237021 tgaaagagaaaatatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaataggatgtatgattaaagggtgttcatgtaacattt 40236922  T
Q  101 tcc 103  Q
    |||    
T  40236921 tcc 40236919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 31408631 - 31408732
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||  ||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  31408631 tgaaagagaaagtatggttgtgaaatgaatttaccaaaatatccttaatgcatgggatgtacaatagagtgtatgattaaagggtgttcatgtaacattt 31408730  T
Q  101 tc 102  Q
    ||    
T  31408731 tc 31408732  T

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Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 27535229 - 27535331
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    ||||||||||||||| ||||||||||||| ||||||||||||| |||| | |||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  27535229 tgaaagagaaagtatagttgtgagatgaaattaccaaaatgtctttaacacatggagtgtacaatagagtgtatgattaaagggtgttcatgtaacattt 27535328  T
Q  101 tcc 103  Q
    |||    
T  27535329 tcc 27535331  T

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Target: chr7; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 4638200 - 4638297
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 101  Q
    |||| ||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||| | |||||||| |||| |||||||||||||||||||    
T  4638200 aagataaagtatggttgtgagatgaacttaccaaaatatccataatatatggggtgtacaattgagtgtatgaataaaaggtgttcatgtaacatttt 4638297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 33384973 - 33384870
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaata-gggtgtatgattaaagggtgttcatgtaacatt 99  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||  |||| || ||||||| ||||||||||||||| | |||||||||||||||    
T  33384973 tgaaagagaaagtatgtttgtgagatgaatttaccaaaatgtccctaatgcatggagtatacaataggggtgtatgattaaatgatgttcatgtaacatt 33384874  T
Q  100 ttcc 103  Q
    ||||    
T  33384873 ttcc 33384870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 10573848 - 10573751
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 101  Q
    |||| ||||| |||||||||||||||||||||||||| | | ||||| ||||||||||||||||| ||||||| ||||||||||| ||||||||||||    
T  10573848 aagataaagtgtggttgtgagatgaatttaccaaaatattcctaatacatggggtgtacaataggatgtatgaataaagggtgtttatgtaacatttt 10573751  T

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Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 44326272 - 44326180
Alignment:
Q  9 aaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 101  Q
    ||||| ||||||||||||||| |||||||||| ||| ||||||||| |||||||||| || ||||||| ||||||||||| ||||||||||||    
T  44326272 aaagtgtggttgtgagatgaacttaccaaaatatccctaatatatgaggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttt 44326180  T

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Target: chr7; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 5810925 - 5811024
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| ||| |||||| ||| |||||||| ||||||||||| ||||||| || ||||||||| ||||||||||||||||    
T  5810925 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaatatatagggtgtacaatggggtgtaggaataaagggtggtcatgtaacattttcc 5811024  T

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Target: chr7; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 24001013 - 24001112
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| || ||||||||||| || |||| || ||||||||||||||||||||||||||    
T  24001013 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 24001112  T

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Target: chr7; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 42538432 - 42538531
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| || ||||||||||| || |||| || ||||||||||||||||||||||||||    
T  42538432 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 42538531  T

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Target: chr7; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 5194232 - 5194331
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    ||||| |||| || |||||||||||||||| |||||| ||||||| | || |||||||||||  ||||||||| |||| |||||||||||||||||||||    
T  5194232 aagagtaagtgtgattgtgagatgaatttatcaaaatatccttaaaacatagggtgtacaatgaggtgtatgaataaatggtgttcatgtaacattttcc 5194331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 35069820 - 35069721
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| ||| ||||||||||  |||||| || ||||| ||||||||||||||||||||    
T  35069820 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagagtgttcatgtaacattttcc 35069721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 43343625 - 43343722
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 101  Q
    |||| ||||| ||||||||||||||| ||| |||||| ||| ||||| ||||||||||||||||||||||  | |||| | |||||||||||||||||    
T  43343625 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaatacatggggtgtacaatagggtgtagaaataaatgatgttcatgtaacatttt 43343722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 44416935 - 44417032
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 101  Q
    |||| ||||| ||||||||||||||| ||| |||||| ||| ||||| ||||||||||||||||||||||  | |||| | |||||||||||||||||    
T  44416935 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaatacatggggtgtacaatagggtgtagaaataaatgatgttcatgtaacatttt 44417032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 5015494 - 5015395
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| ||| |||||||||| | |||||  | ||||| ||||||||||||||||||||    
T  5015494 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacattttcc 5015395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 24280597 - 24280696
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||||||||| || ||||||||||||||||||||||| |   || |  ||||| |||| |||||||||||||| ||||||||||||| ||||||||||||    
T  24280597 aagagaaagtgtgattgtgagatgaatttaccaaaatatttctagtgcatgggatgtagaatagggtgtatgaataaagggtgttcacgtaacattttcc 24280696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 26898408 - 26898499
Alignment:
Q  9 aaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    ||||| ||||||| ||||||| |||||||||| ||| ||||| ||||  |||||||| |||||||||| |||| ||||||||||||||||||    
T  26898408 aaagtgtggttgtaagatgaacttaccaaaatatccctaatacatggaatgtacaattgggtgtatgaataaaaggtgttcatgtaacattt 26898499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 45326119 - 45326020
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| || |||||||||||| |||||||||| ||| ||||||||||||||||||||  | ||||||| |||| |||||| |||||||| |||||    
T  45326119 aagataaagtgtgattgtgagatgaacttaccaaaatatccctaatatatggggtgtacaatgtgatgtatgaataaaaggtgtttatgtaacactttcc 45326020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 41861775 - 41861674
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtc-ct-taatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 101  Q
    |||| ||||| |||||||||||| || |||||||||| || || ||||| || ||||||| ||| |||||||||| ||||||||||||||||||||||||    
T  41861775 aagataaagtgtggttgtgagataaacttaccaaaatatctctataatacatagggtgtataattgggtgtatgaataaagggtgttcatgtaacatttt 41861676  T
Q  102 cc 103  Q
    ||    
T  41861675 cc 41861674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 42972940 - 42972852
Alignment:
Q  15 tggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    ||||||||||||||| |||||||||| ||| ||||| ||| |||||||||| | ||||| || |||||| |||||| ||||||||||||    
T  42972940 tggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtaggaataaaggatgttcaggtaacattttcc 42972852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 184 - 284
Target Start/End: Complemental strand, 25664052 - 25663952
Alignment:
Q  184 aagaagatgtgagaagaactttcctcaccaccaccac---aaaaagcacaattctaagaagcacccggtgttaagacatttctccttgagaaattaatct 280  Q
    |||||||  ||||||||||||||||||||||||||||   |||||||||||||| ||||||||  |||   |||||||||||||||||  |||||| |||    
T  25664052 aagaagacatgagaagaactttcctcaccaccaccaccacaaaaagcacaattcaaagaagcatgcgg---taagacatttctccttgtcaaattagtct 25663956  T
Q  281 ttgt 284  Q
    ||||    
T  25663955 ttgt 25663952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 39998475 - 39998408
Alignment:
Q  36 aaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    ||||| ||| ||||| ||||||||||||||||| ||||||||||||  ||||||||||||||||||||    
T  39998475 aaaatatccctaatacatggggtgtacaataggatgtatgattaaaatgtgttcatgtaacattttcc 39998408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 32029818 - 32029908
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgta 94  Q
    |||| ||||| ||||||| |||||||||||||||||| ||| ||||| |||||||||||||| ||||||| || ||||  ||||| |||||    
T  32029818 aagataaagtgtggttgttagatgaatttaccaaaatatccctaatacatggggtgtacaatggggtgtaggaataaaaagtgtttatgta 32029908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 16180358 - 16180454
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 101  Q
    |||| ||||| |||||||||||||||||||||||||| |   |||||  ||||||||||||| ||||||| || |||| |||||| ||||||||||||    
T  16180358 aagataaagtgtggttgtgagatgaatttaccaaaatatttataatacgtggggtgtacaat-gggtgtaggaataaatggtgttgatgtaacatttt 16180454  T

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Target: chr7; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 9216389 - 9216302
Alignment:
Q  15 tggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    ||||||||||||||| |||||||||| ||  ||||  ||||| ||||||||||| | || || ||||||||||||||||||||||||||    
T  9216389 tggttgtgagatgaacttaccaaaatatctctaatgcatggg-tgtacaataggatataggaataaagggtgttcatgtaacattttcc 9216302  T

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Target: chr7; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 43317542 - 43317443
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    ||||| |||| || |||||||||||||||| |||||| ||| |||   || || ||||||||  ||||||||| |||| |||||||||||||||||||||    
T  43317542 aagagtaagtgtgattgtgagatgaatttatcaaaatatccctaaagcataggatgtacaatgaggtgtatgaataaatggtgttcatgtaacattttcc 43317443  T

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Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 27393261 - 27393344
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgt 87  Q
    |||| ||||| ||||||||||||||| |||| ||||| ||| ||||| || | |||||||||||| |||| || ||||||||||    
T  27393261 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacatagagtgtacaataggatgtaggaataaagggtgt 27393344  T

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Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 38160580 - 38160641
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaat 65  Q
    |||| ||||| | ||||||||||||| |||| ||||| ||| ||||| ||||||||||||||    
T  38160580 aagataaagtgtagttgtgagatgaagttactaaaatatccctaatacatggggtgtacaat 38160641  T

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Target: chr5 (Bit Score: 83; Significance: 4e-39; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 17208176 - 17208074
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||  |||||||||||||||||||||| |||||||||    
T  17208176 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatgcatggggtgtacaataaagtgtatgattaaagggtgttcacgtaacattt 17208077  T
Q  101 tcc 103  Q
    |||    
T  17208076 tcc 17208074  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 32473392 - 32473494
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    ||||||||||||||||||||||||||||| |||||||||| ||| ||||  ||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  32473392 tgaaagagaaagtatggttgtgagatgaaattaccaaaatatccctaatgcatgtggtgtacaataaggtgtatgattaaagggtgttcatgtaacattt 32473491  T
Q  101 tcc 103  Q
    |||    
T  32473492 tcc 32473494  T

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Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 30622717 - 30622818
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||  ||||| | |||||||||||||||||||||||| ||||||||||||||||    
T  30622717 tgaaagagaaagtatggttgtgagataaatttaccaaaatatccttaatgcatgggct-tacaatagggtgtatgattaaaggatgttcatgtaacattt 30622815  T
Q  101 tcc 103  Q
    |||    
T  30622816 tcc 30622818  T

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Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 7617232 - 7617133
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| |||||||||| ||| | |||||||| ||||||||||||||||||||||||||    
T  7617232 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtataatggagtgtatgaataaagggtgttcatgtaacattttcc 7617133  T

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Target: chr5; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 2614650 - 2614749
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| || ||||||||||| || |||| || ||||||||||||||||||||||||||    
T  2614650 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacattttcc 2614749  T

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Target: chr5; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 22512404 - 22512305
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| |||| ||||||||| | ||||| || ||||||||||||||||||||||||||    
T  22512404 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggagtgtacaatggagtgtaggaataaagggtgttcatgtaacattttcc 22512305  T

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Target: chr5; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 38470678 - 38470579
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| || |||||| |||||||||||||||| ||||||||| |||||||||||||| |  ||||||| ||||||||||| ||||||||||||||    
T  38470678 aagataaagtgtgattgtgaaatgaatttaccaaaatatccttaatacatggggtgtacaatggaatgtatgaataaagggtgtttatgtaacattttcc 38470579  T

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Target: chr5; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 41334664 - 41334763
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| || ||||||| |||  ||||||||| ||||||||||||||||||||||||||    
T  41334664 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtataatgaggtgtatgaataaagggtgttcatgtaacattttcc 41334763  T

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Target: chr5; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 5257094 - 5256997
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 101  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| |||||||||||||| || ||||||| |||| |||||| ||||||||||||    
T  5257094 aagataaagtgtggttgtgagatgaaattaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 5256997  T

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Target: chr5; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 18034081 - 18033982
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||| ||||| ||| ||||| || ||||||||||| | ||||| || ||||||||||||||||||||||||||    
T  18034081 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacatagggtgtacaatggagtgtaggaataaagggtgttcatgtaacattttcc 18033982  T

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Target: chr5; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 33855071 - 33855143
Alignment:
Q  31 ttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||||||||||| | ||||| |||||||||||||| ||||||| || ||||||||||||||||||||||||||    
T  33855071 ttaccaaaatgttcctaatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacattttcc 33855143  T

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Target: chr5; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 33801568 - 33801469
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||| ||||| ||| ||||| |||| ||||||||| |||||||  | |||||| |||||||||||||||||||    
T  33801568 aagataaagtgtggttgtgagatgaacttactaaaatatccctaatacatggagtgtacaatggggtgtagaaataaaggatgttcatgtaacattttcc 33801469  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 25915030 - 25915085
Alignment:
Q  46 taatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 101  Q
    ||||| || |||||||||||  |||||| || ||||||||||||||||||||||||    
T  25915030 taatacattgggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 25915085  T

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Target: scaffold0100 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 35454 - 35556
Alignment:
Q  1 tgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattt 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||  ||||||||||||||| |||||||||||||| |||||| |||||||||||    
T  35454 tgaaagagaaagtatggttgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatatggtgtatgattaaatggtgtttatgtaacattt 35553  T
Q  101 tcc 103  Q
    |||    
T  35554 tcc 35556  T

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Target: scaffold0385 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 11350 - 11251
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| |||||||||||||||||||| |||||||||| ||||| |||||||||| |||||||||    
T  11350 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatatatggggtgtacaatggggtgtatgaataaagtgtgttcatgtgacattttcc 11251  T

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Target: scaffold0119 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 784 - 685
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| ||| ||||||||||  |||||| || ||||||||||||||||||||||||||    
T  784 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacattttcc 685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 112754 - 112656
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttc 102  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| ||||| || ||||||||||| |  |||| || |||||||||||||||||||||||||    
T  112754 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacattttc 112656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 14189 - 14288
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||| ||||| ||| ||||| || || |||||||| |||||||  | ||||||||||||||||||||||||||    
T  14189 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacataggatgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 14288  T

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Target: scaffold0187; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 24517 - 24616
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| ||||||||||||||| |||| ||||| ||| ||||| || || |||||||| |||||||  | ||||||||||||||||||||||||||    
T  24517 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacataggatgtacaatggggtgtagaaataaagggtgttcatgtaacattttcc 24616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 23422 - 23521
Alignment:
Q  4 aagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttcc 103  Q
    |||| ||||| || |||| ||||||| |||||||||| ||  ||||| ||||| |||||||| | ||||| || |||||||||||||| |||||||||||    
T  23422 aagataaagtgtgattgtaagatgaacttaccaaaatatctctaatacatgggatgtacaatggagtgtaggaataaagggtgttcatataacattttcc 23521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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