View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2852_high_8 (Length: 364)
Name: NF2852_high_8
Description: NF2852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2852_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 122 - 344
Target Start/End: Complemental strand, 8004838 - 8004621
Alignment:
| Q |
122 |
gatgtaacaattgagaaaatttaagaaaatttcacttgggagaattcatcccctccttgaaaggttgtaaataaattccaacacaagtactcataattat |
221 |
Q |
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| T |
8004838 |
gatgtaacaattgagaaaatttaagaaaatttcacttgggagaattcatcccctccttgagaggttgtaaataaattccaacataagtactcataactat |
8004739 |
T |
|
| Q |
222 |
tgattattttctcttatgtgatttctttcacgtagcaaagaacagtgaactttcccagatcttctctcgtcgtatggaagtccaacggtagaaaaactaa |
321 |
Q |
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| T |
8004738 |
tgattattttctcttatgtgatttctttcacgtagcaaagaacagtgaactttctcaga-----agacgtcgtatggaagtccaatggtagaaaaactaa |
8004644 |
T |
|
| Q |
322 |
aaacaaaccttgaatccagacta |
344 |
Q |
| |
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||||||||||||| ||||||||| |
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| T |
8004643 |
aaacaaaccttgactccagacta |
8004621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 8004958 - 8004898
Alignment:
| Q |
1 |
ctaattctcataagtggaattctccattttactcgattgttacatctcaatcacacactca |
61 |
Q |
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| T |
8004958 |
ctaattctcataagtgaaattctccattttactcgattgttacatctcaaccacacactca |
8004898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 5908853 - 5908914
Alignment:
| Q |
2 |
taattctcataagtggaattctc--cattttactcgattgttacatctcaatcacacactca |
61 |
Q |
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| T |
5908853 |
taattctctcaagtgaaattctcttcatttttctcaattgttacatctcaatcacacactca |
5908914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 5908899 - 5908854
Alignment:
| Q |
122 |
gatgtaacaattgagaaaatttaagaaaatttcacttgggagaatt |
167 |
Q |
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||||||||||||||||||| | |||| ||||||||||| ||||||| |
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|
| T |
5908899 |
gatgtaacaattgagaaaaatgaagagaatttcacttgagagaatt |
5908854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 30364344 - 30364388
Alignment:
| Q |
122 |
gatgtaacaattgagaaaatttaagaaaatttcacttgggagaat |
166 |
Q |
| |
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||||||||||||||||||| | ||||||||||||||| |||||| |
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|
| T |
30364344 |
gatgtaacaattgagaaaaatggagaaaatttcacttgagagaat |
30364388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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