View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2852_high_9 (Length: 360)

Name: NF2852_high_9
Description: NF2852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2852_high_9
NF2852_high_9
[»] chr3 (2 HSPs)
chr3 (11-243)||(55379758-55379983)
chr3 (235-341)||(55380157-55380263)
[»] chr7 (2 HSPs)
chr7 (239-319)||(17165852-17165932)
chr7 (272-335)||(41483140-41483203)
[»] chr5 (1 HSPs)
chr5 (231-319)||(33215065-33215153)
[»] chr6 (1 HSPs)
chr6 (236-335)||(832186-832284)
[»] chr2 (1 HSPs)
chr2 (272-335)||(12987364-12987427)


Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 55379758 - 55379983
Alignment:
Q  11 cacagacctatgtccaactgcttttggacataacatatatgcctgagaaaattcattgaaatatatcataagtatacatgcatgcacctatgcatgtaat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  55379758 cacagacctatgtccaactgcttttggacataacatatatgcctgagaaaattcattgaaata-------agtatacatgcatgcacctatgcatgtaat 55379850  T
Q  111 ataatttgaaaactttccggtagccacatatacaatatcagcaagcatgccggtgcaacatgagaataacaggctctaaaatttaaactttaaaaaagcc 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  55379851 ataatttgaaaactttccggtagccacatatacaatatcagcaagcatgccggtgcaacatgagaataacaggctctaaaatttaacctttaaaaaagcc 55379950  T
Q  211 atgatagcacaatatactagtaatatgttagat 243  Q
    |||||||||||||||||||||||||||||||||    
T  55379951 atgatagcacaatatactagtaatatgttagat 55379983  T

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Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 235 - 341
Target Start/End: Original strand, 55380157 - 55380263
Alignment:
Q  235 atgttagatactagttcaaatattaataaatattgaagatagttcgatggtatttgggagattattggataataacaaggaaatgtacatgatgtattat 334  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55380157 atgttagacactagttcaaatattaataaatattgaagatagttcgatggtatttgggagattattggataataacaaggaaatgtacatgatgtattat 55380256  T
Q  335 tgataca 341  Q
    |||||||    
T  55380257 tgataca 55380263  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 319
Target Start/End: Original strand, 17165852 - 17165932
Alignment:
Q  239 tagatactagttcaaatattaataaatattgaagatagttcgatggtatttgggagattattggataataacaaggaaatg 319  Q
    |||||||| ||||| || | ||||||||| || |||| ||| ||||||||||||||||||||| ||||||| |||| ||||    
T  17165852 tagatactggttcagatgtgaataaatatcgatgataattctatggtatttgggagattattgcataataataagggaatg 17165932  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 335
Target Start/End: Complemental strand, 41483203 - 41483140
Alignment:
Q  272 gatagttcgatggtatttgggagattattggataataacaaggaaatgtacatgatgtattatt 335  Q
    |||| ||| ||||||||||||||||||||| ||||||| |||| |||| || ||||||||||||    
T  41483203 gataattctatggtatttgggagattattgcataataataagggaatgcacgtgatgtattatt 41483140  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 231 - 319
Target Start/End: Original strand, 33215065 - 33215153
Alignment:
Q  231 taatatgttagatactagttcaaatattaataaatattgaagatagttcgatggtatttgggagattattggataataacaaggaaatg 319  Q
    |||| ||||||||||| ||||| || | ||||||||  || |||| ||| ||||||||||||||||||||| ||||||| |||| ||||    
T  33215065 taatctgttagatactggttcagatgtgaataaataccgatgataattcaatggtatttgggagattattgcataataataagggaatg 33215153  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 335
Target Start/End: Complemental strand, 832284 - 832186
Alignment:
Q  236 tgttagatactagttcaaatattaataaatattgaagatagttcgatggtatttgggagattattggataataacaaggaaatgtacatgatgtattatt 335  Q
    ||||||||||| ||||| ||| || ||||||   | |||| ||| ||| |||||||| |||||||||||||||| |||| ||||||| | ||||||||||    
T  832284 tgttagatactggttcagataatattaaataccaatgataattctatgatatttgggggattattggataataataagggaatgtacgt-atgtattatt 832186  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 335
Target Start/End: Original strand, 12987364 - 12987427
Alignment:
Q  272 gatagttcgatggtatttgggagattattggataataacaaggaaatgtacatgatgtattatt 335  Q
    |||| ||| ||||||||||||||||||| | ||||||| |||| |||| || ||||||||||||    
T  12987364 gataattctatggtatttgggagattatagcataataataagggaatgcacgtgatgtattatt 12987427  T

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