View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2852_low_10 (Length: 350)
Name: NF2852_low_10
Description: NF2852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2852_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 340
Target Start/End: Complemental strand, 26017354 - 26017031
Alignment:
| Q |
19 |
ccatgtccatcaaatatgccnnnnnnngcctgtaccaatcacaaacaaaaatcttagactatatattggtccttgcacatgcatccattttgtaaatccc |
118 |
Q |
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| T |
26017354 |
ccatgtccatcaaatatgccaaaaaatgcctgtaccaatcacaaacaaaaatcttagactatatattggtccttacacatgtatccattttgtaaatccc |
26017255 |
T |
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| Q |
119 |
attaaccataaattcaataagacctttccaaatttgtttaataaatctatatagtatnnnnnnnnnnnnnnn--gatgaacaaatccatgcaacccatga |
216 |
Q |
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| T |
26017254 |
attaaccataaatttaataagacctttccaaatttgtttaataaatctatatagtataaaaaaaaaaaaaaaaagatgaacaaatccatgcaacccatga |
26017155 |
T |
|
| Q |
217 |
agttacctgtttagattgtccatgaagatcaagagaagcagagtaacgatcctccatatgcttcctgcttcctctcttacaatacacagaaaacccatct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26017154 |
agttacctgtttagattgtccatgaagatcaagagaagcagagtaacgatcctccatatgcttcctgcttcctctcttacaatacacagaaaacccatct |
26017055 |
T |
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| Q |
317 |
ccttctacctcaacaacattcttc |
340 |
Q |
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||||||||||||||||||| |||| |
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| T |
26017054 |
ccttctacctcaacaacatccttc |
26017031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 214 - 340
Target Start/End: Complemental strand, 26002114 - 26001988
Alignment:
| Q |
214 |
tgaagttacctgtttagattgtccatgaagatcaagagaagcagagtaacgatcctccatatgcttcctgcttcctctcttacaatacacagaaaaccca |
313 |
Q |
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||||||||||||||| |||| ||||||||||||| ||||||||| ||||||||||||||||| || || | |||| ||||||||||||||||||| ||| |
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| T |
26002114 |
tgaagttacctgttttgattcaccatgaagatcaacagaagcagaataacgatcctccatatgttttctacctcctttcttacaatacacagaaaatcca |
26002015 |
T |
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| Q |
314 |
tctccttctacctcaacaacattcttc |
340 |
Q |
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||||| || ||||||||||||| |||| |
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| T |
26002014 |
tctccctccacctcaacaacatccttc |
26001988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 335
Target Start/End: Complemental strand, 30373307 - 30373232
Alignment:
| Q |
260 |
taacgatcctccatatgcttcctgcttcctctcttacaatacacagaaaacccatctccttctacctcaacaacat |
335 |
Q |
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|||||||| ||||||| || ||| || |||||||||||||| |||||| |||||||||| || |||||||||||| |
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| T |
30373307 |
taacgatcttccatatactccctcctccctctcttacaataaacagaatacccatctccctccgcctcaacaacat |
30373232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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