View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2852_low_11 (Length: 348)
Name: NF2852_low_11
Description: NF2852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2852_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 1178521 - 1178200
Alignment:
| Q |
1 |
aagctaacatagaagaaaatgagccaaacgtacaagcctgataaaatgaaatgaaagccggcctnnnnnnnncaaggaatgaatgccaaaaagaaattaa |
100 |
Q |
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| T |
1178521 |
aagctaacatagaagaaaatgagccaaacgtacaagcctgataaaatgaaatgaaagccggcctaaaaaaaacaaggaatgaaagccaaaaagaaattaa |
1178422 |
T |
|
| Q |
101 |
gctaacttaaaaagaaattaagctgagctaacaaagcacatcatagaagcaaattcaattcgaaatcctttcaattttgcattggtaaatgccttttgga |
200 |
Q |
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| T |
1178421 |
gctgagctaacaaagcatt-------------gtagtacatcatagaagcaatttcaatttgaaatcctttcaattttgcattggtaaatgccttttgga |
1178335 |
T |
|
| Q |
201 |
attaggactccaagccaaaaaagacttatacaagtaattgttgtattcaatgaaatcattcatcttaaatatcttgaactggttgtgtttaatttatgat |
300 |
Q |
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| T |
1178334 |
attaggactccaagccaaaaaagacttatacaagtaattgttgtattcaatgaaatcattcatcttaaataccttgaactggttgtgtttaatttatgat |
1178235 |
T |
|
| Q |
301 |
tatgcgaatgagcaatgcttaagattgttattatt |
335 |
Q |
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| T |
1178234 |
tatgcgaatgagcaatgcttaagattgttattatt |
1178200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 140 - 255
Target Start/End: Complemental strand, 35050195 - 35050081
Alignment:
| Q |
140 |
atcatagaagcaaattcaattcgaaatcctttcaattttgcattggtaaatgccttttggaattaggactccaagccaaaaaagacttatacaagtaatt |
239 |
Q |
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| T |
35050195 |
atcatagaagcaatttcaatttgaaattctttgaattttgcattggtaaatgctttttggaattgagactcaaagcc-aaaaagactaatacaagcaatt |
35050097 |
T |
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| Q |
240 |
gttgtattcaatgaaa |
255 |
Q |
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| T |
35050096 |
gttgtattaaatgaaa |
35050081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 14663432 - 14663475
Alignment:
| Q |
176 |
tttgcattggtaaatgccttttggaattaggactccaagccaaa |
219 |
Q |
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| T |
14663432 |
tttgcattggtaaatgccttttggaattgagactcaaagccaaa |
14663475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 220
Target Start/End: Original strand, 8533440 - 8533522
Alignment:
| Q |
138 |
acatcatagaagcaaattcaattcgaaatcctttcaattttgcattggtaaatgccttttggaattaggactccaagccaaaa |
220 |
Q |
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| T |
8533440 |
acatcatagaagaaacttctacttgaaattctttgaattttgcattggtaaatgatttttggaattgtgattcaaagccaaaa |
8533522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 26304361 - 26304281
Alignment:
| Q |
140 |
atcatagaagcaaattcaattcgaaatcctttcaattttgcattggtaaatgccttttggaattaggactccaagccaaaa |
220 |
Q |
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|||||||| |||| ||| | | ||||| |||| |||||||||||||||||| |||||||||| ||||| ||||||||| |
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| T |
26304361 |
atcatagaggcaacttctacttgaaattctttgaattttgcattggtaaataatttttggaattgtgactcaaagccaaaa |
26304281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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