View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2852_low_13 (Length: 325)
Name: NF2852_low_13
Description: NF2852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2852_low_13 |
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| [»] scaffold1637 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 13325215 - 13324925
Alignment:
| Q |
18 |
actgttgaaagctgtcgtgattccttgacgccaaagttgagggctggagacgctagctcttcctgccagtcaaacatggctgaggtaggcaaagccacac |
117 |
Q |
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| T |
13325215 |
actgttgaaagctgtcgtgattccttgacgccaaagttgagggctggagacgctagctcttcctgccagtcaaacatggctgaggtaggcaaagccacac |
13325116 |
T |
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| Q |
118 |
cggaggtatggcagtcgtaaatcaaaccgtggcaacaatcaaaagcttaaaggcgaaattctgcaattttgacaatatgaagaaaatcggtagagaaaag |
217 |
Q |
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| T |
13325115 |
cggaggtatggcagtcgtaaatcaaaccgtggcaacaatcaaaagcttaaaggcgaaattctgcaattttgacaatatgaagaaaatcggtagagaaaag |
13325016 |
T |
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| Q |
218 |
ttcccaatgatgaaatagcgtgactcaatctttgtaacacacatggtattaacgcgattgcactaattcaatggaaggaaacaagtctgaa |
308 |
Q |
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| T |
13325015 |
ttcccaatgatgaaatagcgtgactcaatctttgtaacacacatggtattaacgcgattgcactaattcaatggaaggaaacaagtctgaa |
13324925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 30412939 - 30412807
Alignment:
| Q |
17 |
cactgttgaaagctgtcgtgattccttgacgccaaagttgagggctggagacgctagctcttcctgcca----gtcaaacatggctgaggtaggcaaagc |
112 |
Q |
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| T |
30412939 |
cactgttgaaagctgtcgtgattccttggttccaaagttgagggttggaggcgctagctctgcctgccagtcagtcaaacatggctgaggctggcaaagc |
30412840 |
T |
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| Q |
113 |
cacaccggaggtatggcagtcgtaaatcaaacc |
145 |
Q |
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| T |
30412839 |
cacaccggagctagggcagtcgtaattcaaacc |
30412807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 214 - 300
Target Start/End: Complemental strand, 20387657 - 20387571
Alignment:
| Q |
214 |
aaagttcccaatgatgaaat-agcgtgactcaatctttgtaacacacatggtattaacgcgattgcactaattcaatggaaggaaaca |
300 |
Q |
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| T |
20387657 |
aaagttcctaatgatgaatttagtgtgattcaatctttgtaacacg-attgtattaacgcgattgcactaattcaatggaaagaaaca |
20387571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 25977387 - 25977435
Alignment:
| Q |
242 |
tcaatctttgtaacacacatggtattaacgcgattgcactaattcaatgg |
291 |
Q |
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| T |
25977387 |
tcaatctttgtaacacaaata-tattaacgcgattgcactaattcaatgg |
25977435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1637 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1637
Description:
Target: scaffold1637; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 541 - 493
Alignment:
| Q |
73 |
gctcttcctgccagtcaaacatggctgaggtaggcaaagccacaccgga |
121 |
Q |
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| T |
541 |
gctctgcctgccagtcaaacatggctggggcaggcaaaaccacaccgga |
493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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