View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2852_low_14 (Length: 303)

Name: NF2852_low_14
Description: NF2852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2852_low_14
NF2852_low_14
[»] chr3 (15 HSPs)
chr3 (1-290)||(31093581-31093869)
chr3 (3-290)||(13002781-13003067)
chr3 (3-290)||(31252519-31252805)
chr3 (1-278)||(16163207-16163485)
chr3 (61-290)||(27206605-27206825)
chr3 (61-138)||(25658682-25658759)
chr3 (61-138)||(25665087-25665164)
chr3 (61-138)||(25671492-25671569)
chr3 (61-138)||(25677897-25677974)
chr3 (61-138)||(25684573-25684650)
chr3 (226-290)||(25658840-25658904)
chr3 (226-290)||(25665245-25665309)
chr3 (226-290)||(25671650-25671714)
chr3 (226-290)||(25678055-25678119)
chr3 (226-290)||(25684731-25684795)
[»] scaffold0029 (2 HSPs)
scaffold0029 (61-138)||(18364-18441)
scaffold0029 (61-138)||(43376-43453)
[»] chr2 (4 HSPs)
chr2 (61-138)||(33120609-33120686)
chr2 (61-138)||(33130352-33130429)
chr2 (72-138)||(19112443-19112509)
chr2 (72-133)||(19117257-19117318)


Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 31093869 - 31093581
Alignment:
Q  1 tttcatcgaatactttaatgagcagctnnnnnnntccttagagataataaaacagaaacaaccctcaagctaagatagtatattttgactattacaacga 100  Q
    |||||||||||||||||||||||||||       ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31093869 tttcatcgaatactttaatgagcagctaaaaaaatccatagagataataaaacagaaaca-ccctcaagctaagatagtatattttgactattacaacga 31093771  T
Q  101 tgccaaacgtttatatcaagcaccgcaacaatatggtgcgtggagccattattttctttccatgttaagttttcattgatttatacttatcaaatttatt 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31093770 tgccaaacgtttatatcaagcaccacaacaatatggtgcgtggagccattattttctttccatgttaagttttcattgatttatacttatcaaatttatt 31093671  T
Q  201 tgatcccatgcactaatttctgttcattaatgatgcaggttttatttttgataaagtcgagattttggaagcatgttgcagaggaagtgg 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||| ||||||||||    
T  31093670 tgatcccatgcactaatttctgttcattaatgatgcaggttttatttctgataaagtcgaaattttgaaagcatgttgcggaggaagtgg 31093581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 3 - 290
Target Start/End: Complemental strand, 13003067 - 13002781
Alignment:
Q  3 tcatcgaatactttaatgagcagctnnnnnnntccttagagataataaaacagaaacaaccctcaagctaagatagtatattttgactattacaacgatg 102  Q
    |||| ||||||||||||||||||||       ||| |||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  13003067 tcattgaatactttaatgagcagctaaaaaaatccatagagacaataaaacagaaaca-ccctcaagctaagatagtatattttgattattacaacgatg 13002969  T
Q  103 ccaaacgtttatatcaagcaccgcaacaatatggtgcgtggagccattattttctttccatgttaagttttcattgatttatacttatcaaatttatttg 202  Q
    |||| |||||||||||| |||| ||||||||||||| ||||||| |||||||||||||| |||||| |||| |||| || || |||||||||||| ||||    
T  13002968 ccaagcgtttatatcaaacaccacaacaatatggtgtgtggagcaattattttctttccttgttaactttttattgtttaattcttatcaaatttgtttg 13002869  T
Q  203 atcccatgcactaatttctgttcattaatgatgcaggttttatttttgataaagtcgagattttggaagcatgttgcagaggaagtgg 290  Q
    ||||||| ||||||||| ||| ||||||||||||||||||||||| |||||| |||||||||||| ||||||||||  ||||||||||    
T  13002868 atcccattcactaatttatgtacattaatgatgcaggttttatttctgataaggtcgagattttgaaagcatgttgtggaggaagtgg 13002781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 3 - 290
Target Start/End: Original strand, 31252519 - 31252805
Alignment:
Q  3 tcatcgaatactttaatgagcagctnnnnnnntccttagagataataaaacagaaacaaccctcaagctaagatagtatattttgactattacaacgatg 102  Q
    |||| ||||||||||||||||||||       ||| |||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  31252519 tcattgaatactttaatgagcagctaaaaaaatccatagagacaataaaacagaaaca-ccctcaagctaagatagtatattttgattattacaacgatg 31252617  T
Q  103 ccaaacgtttatatcaagcaccgcaacaatatggtgcgtggagccattattttctttccatgttaagttttcattgatttatacttatcaaatttatttg 202  Q
    |||| |||||||||||| |||| ||||| ||||||| ||||||| |||||||||||||| |||||| |||| |||| ||||| |||||||||||| ||||    
T  31252618 ccaagcgtttatatcaaacacctcaacagtatggtgtgtggagcaattattttctttccttgttaactttttattgttttattcttatcaaatttgtttg 31252717  T
Q  203 atcccatgcactaatttctgttcattaatgatgcaggttttatttttgataaagtcgagattttggaagcatgttgcagaggaagtgg 290  Q
    ||||||| ||||||||| ||| ||||||||||||||||||||||| |||||| |||||||||||| ||||||||||  ||||||||||    
T  31252718 atcccattcactaatttatgtacattaatgatgcaggttttatttctgataaggtcgagattttgaaagcatgttgtggaggaagtgg 31252805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 16163207 - 16163485
Alignment:
Q  1 tttcatcgaatactttaatgagcagctnnnnnnntccttagagataataaaacagaaacaaccctcaagctaagatagtatattttgactattacaacga 100  Q
    |||||||||||||||||||||||| ||       ||| |||||| | ||   |||||||| || ||||||||||||| ||||||||||||| ||||||||    
T  16163207 tttcatcgaatactttaatgagcaactaaaaaaatccatagagacattacggcagaaacatcc-tcaagctaagataatatattttgactactacaacga 16163305  T
Q  101 tgccaaacgtttatatcaagcaccgcaacaatatggtgcgtggagccattattttctttccatgttaagttttcattgatttatacttatcaaatttatt 200  Q
    |||||||||||||||| ||||||| ||||||||||||  ||||||| ||||||||  |||| |||||||||| |||| |||||| |||  ||||||||||    
T  16163306 tgccaaacgtttatatgaagcaccacaacaatatggtctgtggagcaattattttacttccttgttaagtttacatttatttattcttgacaaatttatt 16163405  T
Q  201 tgatcccat--gcactaatttctgttcattaatgatgcaggttttatttttgataaagtcgagattttggaagcatgttg 278  Q
    |||||||||   ||||| ||| ||| ||||||||||| ||| |||| || |||||| |||||| ||||| ||||||||||    
T  16163406 tgatcccatcctcactagtttatgtgcattaatgatgtaggctttacttctgataaggtcgaggttttgaaagcatgttg 16163485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 61 - 290
Target Start/End: Original strand, 27206605 - 27206825
Alignment:
Q  61 accctcaagctaagatagtatattttgactattacaacgatgccaaacgtttatatcaagcaccgcaacaatatggtgcgtggagccattattttctttc 160  Q
    |||||||||||||||||||||| ||||||  |||||| |||| |||||||||||| ||||||||  |||||||||| | ||||||| |||||||||||||    
T  27206605 accctcaagctaagatagtatactttgacgtttacaatgatgtcaaacgtttataccaagcaccagaacaatatgg-gtgtggagcaattattttctttc 27206703  T
Q  161 catgttaagttttcattgatttatacttatcaaatttatttgatcccatgcactaatttctgttcattaatgatgcaggttttatttttgataaagtcga 260  Q
    | ||    |||| ||||||| ||| ||| ||||||||||||| | |||||||||||   || |  || ||| |||||||||||| ||| ||||| |||||    
T  27206704 c-tg----gtttacattgatctattcttgtcaaatttatttgtttccatgcactaa---ctttatatcaataatgcaggttttactttggataacgtcga 27206795  T
Q  261 gattttggaagcatgttgcagaggaagtgg 290  Q
    ||||||| ||||||||||  ||||||||||    
T  27206796 gattttgaaagcatgttgtggaggaagtgg 27206825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 25658682 - 25658759
Alignment:
Q  61 accctcaagctaagatagtatattttgactattacaacgatgccaaacgtttatatcaagcaccgcaacaatatggtg 138  Q
    ||||||||||||||||| ||||||||||||| |||||| ||  |||||||||||||||| |||| || ||||||||||    
T  25658682 accctcaagctaagataatatattttgactactacaacaatctcaaacgtttatatcaaacaccacagcaatatggtg 25658759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 25665087 - 25665164
Alignment:
Q  61 accctcaagctaagatagtatattttgactattacaacgatgccaaacgtttatatcaagcaccgcaacaatatggtg 138  Q
    ||||||||||||||||| ||||||||||||| |||||| ||  |||||||||||||||| |||| || ||||||||||    
T  25665087 accctcaagctaagataatatattttgactactacaacaatctcaaacgtttatatcaaacaccacagcaatatggtg 25665164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 25671492 - 25671569
Alignment:
Q  61 accctcaagctaagatagtatattttgactattacaacgatgccaaacgtttatatcaagcaccgcaacaatatggtg 138  Q
    ||||||||||||||||| ||||||||||||| |||||| ||  |||||||||||||||| |||| || ||||||||||    
T  25671492 accctcaagctaagataatatattttgactactacaacaatctcaaacgtttatatcaaacaccacagcaatatggtg 25671569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 25677897 - 25677974
Alignment:
Q  61 accctcaagctaagatagtatattttgactattacaacgatgccaaacgtttatatcaagcaccgcaacaatatggtg 138  Q
    ||||||||||||||||| ||||||||||||| |||||| ||  |||||||||||||||| |||| || ||||||||||    
T  25677897 accctcaagctaagataatatattttgactactacaacaatctcaaacgtttatatcaaacaccacagcaatatggtg 25677974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 25684573 - 25684650
Alignment:
Q  61 accctcaagctaagatagtatattttgactattacaacgatgccaaacgtttatatcaagcaccgcaacaatatggtg 138  Q
    ||||||||||||||||| ||||||||||||| |||||| ||  |||||||||||||||| |||| || ||||||||||    
T  25684573 accctcaagctaagataatatattttgactactacaacaatctcaaacgtttatatcaaacaccacagcaatatggtg 25684650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 25658840 - 25658904
Alignment:
Q  226 attaatgatgcaggttttatttttgataaagtcgagattttggaagcatgttgcagaggaagtgg 290  Q
    |||||||||||||||||||||| |||||| |  ||||||||| ||||||||||  ||||||||||    
T  25658840 attaatgatgcaggttttatttctgataaggaagagattttgaaagcatgttgtggaggaagtgg 25658904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 25665245 - 25665309
Alignment:
Q  226 attaatgatgcaggttttatttttgataaagtcgagattttggaagcatgttgcagaggaagtgg 290  Q
    |||||||||||||||||||||| |||||| |  ||||||||| ||||||||||  ||||||||||    
T  25665245 attaatgatgcaggttttatttctgataaggaagagattttgaaagcatgttgtggaggaagtgg 25665309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 25671650 - 25671714
Alignment:
Q  226 attaatgatgcaggttttatttttgataaagtcgagattttggaagcatgttgcagaggaagtgg 290  Q
    |||||||||||||||||||||| |||||| |  ||||||||| ||||||||||  ||||||||||    
T  25671650 attaatgatgcaggttttatttctgataaggaagagattttgaaagcatgttgtggaggaagtgg 25671714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 25678055 - 25678119
Alignment:
Q  226 attaatgatgcaggttttatttttgataaagtcgagattttggaagcatgttgcagaggaagtgg 290  Q
    |||||||||||||||||||||| |||||| |  ||||||||| ||||||||||  ||||||||||    
T  25678055 attaatgatgcaggttttatttctgataaggaagagattttgaaagcatgttgtggaggaagtgg 25678119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 25684731 - 25684795
Alignment:
Q  226 attaatgatgcaggttttatttttgataaagtcgagattttggaagcatgttgcagaggaagtgg 290  Q
    |||||||||||||||||||||| |||||| |  ||||||||| ||||||||||  ||||||||||    
T  25684731 attaatgatgcaggttttatttctgataaggaagagattttgaaagcatgttgtggaggaagtgg 25684795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 18441 - 18364
Alignment:
Q  61 accctcaagctaagatagtatattttgactattacaacgatgccaaacgtttatatcaagcaccgcaacaatatggtg 138  Q
    ||||| ||| ||||||| |||| |||||||| || || ||||||||||||||||||||| ||||||||||||||||||    
T  18441 accctgaagttaagataatatactttgactactataatgatgccaaacgtttatatcaaacaccgcaacaatatggtg 18364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 43453 - 43376
Alignment:
Q  61 accctcaagctaagatagtatattttgactattacaacgatgccaaacgtttatatcaagcaccgcaacaatatggtg 138  Q
    ||||| ||| ||||||| |||| |||||||| || || ||||||||| ||||||||||| ||||||||||||||||||    
T  43453 accctgaagttaagataatatactttgactactataatgatgccaaatgtttatatcaaacaccgcaacaatatggtg 43376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 33120686 - 33120609
Alignment:
Q  61 accctcaagctaagatagtatattttgactattacaacgatgccaaacgtttatatcaagcaccgcaacaatatggtg 138  Q
    ||||| ||| ||||||| |||| |||||||| || || ||||||||||||||||||||| ||||||||||||||||||    
T  33120686 accctgaagttaagataatatactttgactactataatgatgccaaacgtttatatcaaacaccgcaacaatatggtg 33120609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 33130429 - 33130352
Alignment:
Q  61 accctcaagctaagatagtatattttgactattacaacgatgccaaacgtttatatcaagcaccgcaacaatatggtg 138  Q
    ||||| ||| ||||||| |||| |||||||| || || ||||||||||||||||||||| ||||||||||||||||||    
T  33130429 accctgaagttaagataatatactttgactactataatgatgccaaacgtttatatcaaacaccgcaacaatatggtg 33130352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 19112443 - 19112509
Alignment:
Q  72 aagatagtatattttgactattacaacgatgccaaacgtttatatcaagcaccgcaacaatatggtg 138  Q
    |||||| ||||||||||||| ||||| | |||||||||||||||  |||||||  ||||||| ||||    
T  19112443 aagataatatattttgactactacaatgctgccaaacgtttatacgaagcaccagaacaatacggtg 19112509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 19117257 - 19117318
Alignment:
Q  72 aagatagtatattttgactattacaacgatgccaaacgtttatatcaagcaccgcaacaata 133  Q
    |||||| ||||||||||||| ||||| | |||||||||||||||  |||||||  |||||||    
T  19117257 aagataatatattttgactactacaatgctgccaaacgtttatacgaagcaccagaacaata 19117318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University