View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2852_low_21 (Length: 260)

Name: NF2852_low_21
Description: NF2852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2852_low_21
NF2852_low_21
[»] chr5 (3 HSPs)
chr5 (16-247)||(14337536-14337767)
chr5 (62-108)||(38685296-38685342)
chr5 (67-115)||(10948766-10948814)
[»] chr7 (3 HSPs)
chr7 (51-109)||(25280406-25280464)
chr7 (51-91)||(8093856-8093896)
chr7 (65-113)||(46179911-46179958)
[»] chr8 (1 HSPs)
chr8 (59-109)||(14619001-14619051)
[»] chr2 (1 HSPs)
chr2 (60-94)||(32102856-32102890)
[»] chr6 (2 HSPs)
chr6 (61-94)||(24105287-24105320)
chr6 (61-105)||(201518-201562)
[»] chr1 (2 HSPs)
chr1 (55-95)||(32587198-32587239)
chr1 (59-95)||(32638457-32638493)


Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 14337536 - 14337767
Alignment:
Q  16 cacagattgaagctttgtttgttgttcgacagttatcagacatcgacatgacactgacacatgtgattatattcaattatttccattttctcaacttact 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14337536 cacagattgaagctttgtttgttgttcgacagttatcagacatcgacatgacactgacacacgtgattatattcaattatttccattttctcaacttact 14337635  T
Q  116 tagtgtcgatgtcgtgtctatgtatgaatttcatagctcaatactaatgaaaatgacaacacaaaagtatagaaaaatcaaacttttgcaaagaaactga 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14337636 tagtgtcgatgtcgtgtctatgtatgaatttcatagctcaatactaatgaaaatgacaacacaaaagtatagaaaaatcaaacttttgcaaagaaactga 14337735  T
Q  216 aaaggccagtgaacaaacgatacacaaacaca 247  Q
    ||||||||||||||||||||||||||||||||    
T  14337736 aaaggccagtgaacaaacgatacacaaacaca 14337767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 38685296 - 38685342
Alignment:
Q  62 catgacactgacacatgtgattatattcaattatttccattttctca 108  Q
    ||||||||||||||||||| ||| ||||||||| |||||||||||||    
T  38685296 catgacactgacacatgtggttacattcaattacttccattttctca 38685342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 10948766 - 10948814
Alignment:
Q  67 cactgacacatgtgattatattcaattatttccattttctcaacttact 115  Q
    |||| ||||||||| ||||||||||||| ||||||||| |||| |||||    
T  10948766 cactaacacatgtggttatattcaattacttccattttttcaaattact 10948814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 25280464 - 25280406
Alignment:
Q  51 tcagacatcgacatgacactgacacatgtgattatattcaattatttccattttctcaa 109  Q
    |||||||  |||| |||||  ||||||||||||||||||||||| ||||||||||||||    
T  25280464 tcagacactgacacgacacaaacacatgtgattatattcaattacttccattttctcaa 25280406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 8093896 - 8093856
Alignment:
Q  51 tcagacatcgacatgacactgacacatgtgattatattcaa 91  Q
    ||||||| |||| ||||||||||||||||||||||||||||    
T  8093896 tcagacaccgacttgacactgacacatgtgattatattcaa 8093856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 46179911 - 46179958
Alignment:
Q  65 gacactgacacatgtgattatattcaattatttccattttctcaactta 113  Q
    ||||| |||||||||||||||||||||||| ||  ||||||||||||||    
T  46179911 gacaccgacacatgtgattatattcaattaatt-tattttctcaactta 46179958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 14619001 - 14619051
Alignment:
Q  59 cgacatgacactgacacatgtgattatattcaattatttccattttctcaa 109  Q
    ||||||||||| ||||| |||||||  ||||||||| ||||||||||||||    
T  14619001 cgacatgacaccgacacttgtgatttcattcaattacttccattttctcaa 14619051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 94
Target Start/End: Original strand, 32102856 - 32102890
Alignment:
Q  60 gacatgacactgacacatgtgattatattcaatta 94  Q
    ||||||||||||||| |||||||||||||||||||    
T  32102856 gacatgacactgacaaatgtgattatattcaatta 32102890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 94
Target Start/End: Original strand, 24105287 - 24105320
Alignment:
Q  61 acatgacactgacacatgtgattatattcaatta 94  Q
    ||||||||||||||||| ||||||||||||||||    
T  24105287 acatgacactgacacatttgattatattcaatta 24105320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 201562 - 201518
Alignment:
Q  61 acatgacactgacacatgtgattatattcaattatttccattttc 105  Q
    |||||||||||||||||||||||| ||| |||||| ||| |||||    
T  201562 acatgacactgacacatgtgattacattaaattatatcctttttc 201518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 32587239 - 32587198
Alignment:
Q  55 acatcgaca-tgacactgacacatgtgattatattcaattat 95  Q
    ||||||||| ||||||||||||||||||||| ||||||||||    
T  32587239 acatcgacactgacactgacacatgtgattacattcaattat 32587198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 32638493 - 32638457
Alignment:
Q  59 cgacatgacactgacacatgtgattatattcaattat 95  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  32638493 cgacacgacactgacacatgtgattacattcaattat 32638457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University