View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2852_low_22 (Length: 260)
Name: NF2852_low_22
Description: NF2852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2852_low_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 20415532 - 20415757
Alignment:
| Q |
1 |
gaaaatggtgaaagggttaccacagatcaagctacctagttaactatgtgataaatgttgcactagaaaacaagcaagaagctcatacaaggctggaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
20415532 |
gaaaatggtgaaagggttaccacagatcaagctacctagttaactatgtgataaatgttgcactagaaaacaagcaagaagctcatacaaggttgtaatt |
20415631 |
T |
|
| Q |
101 |
ccagttaaagaaactaggaagcttgaagttattcactattatgtttatggaccatttgatgtcaaatcactgggaggtaacaactactttgcgtcattca |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20415632 |
ccagttaaagaaactaggaagcttgtagttattcactattatgtttatggaacatttgatgtcaaatcactgggaggtaacaactactttgcgtcattca |
20415731 |
T |
|
| Q |
201 |
tagatgaatttactagaaagttgtga |
226 |
Q |
| |
|
|||||||||||||||||||| ||||| |
|
|
| T |
20415732 |
tagatgaatttactagaaagctgtga |
20415757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 9505601 - 9505652
Alignment:
| Q |
185 |
tactttgcgtcattcatagatgaatttactagaaagttgtgaatttacttga |
236 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
9505601 |
tactttgtgacattcatagatgaatttactagaaagttatggatttacttga |
9505652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 259
Target Start/End: Original strand, 30738199 - 30738255
Alignment:
| Q |
203 |
gatgaatttactagaaagttgtgaatttacttgaaagccaagaaaagtgatgtgttt |
259 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||| |||||||||||||||| ||||| |
|
|
| T |
30738199 |
gatgaatttactagaaaattgtggatttacttgatagccaagaaaagtgatttgttt |
30738255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 222
Target Start/End: Complemental strand, 368695 - 368621
Alignment:
| Q |
148 |
tggaccatttgatgtcaaatcactgggaggtaacaactactttgcgtcattcatagatgaatttactagaaagtt |
222 |
Q |
| |
|
|||||| ||||| || |||||| | ||||| || | ||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
368695 |
tggaccctttgaagtgaaatcagtaggaggaaatagatactttgtgacattcatagatgaatttactagaaagtt |
368621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 16839035 - 16838985
Alignment:
| Q |
185 |
tactttgcgtcattcatagatgaatttactagaaagttgtgaatttacttg |
235 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||| || ||| ||||| |
|
|
| T |
16839035 |
tactttgtgacattcatagatgaatttactagaaagttatggattcacttg |
16838985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University