View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2852_low_23 (Length: 249)
Name: NF2852_low_23
Description: NF2852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2852_low_23 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 7100183 - 7100414
Alignment:
| Q |
18 |
atcttcactttcaacaacccaaaatcatagtttctggaaaattcctcagctatctcatttagtactcatgatacacacttgaaagatttgtttcacatag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7100183 |
atcttcactttcaacaacccaaaatcatagtttctggaaaattcctcagctatctcatttagtactcatgatacacacttgaaagatttgtttcacatag |
7100282 |
T |
|
| Q |
118 |
atggggccacttattatgaattcaacatgaaaagtgaaacaaataataaggcaaccaaaacctatatatatgtagagcaatccaaagacaatgataaata |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
7100283 |
atggggccacttattatgaattcaacatgaaaagtgaaacaaataataaggcaaccaaaacctatatacatgtagagcaatccagagacaatgataaata |
7100382 |
T |
|
| Q |
218 |
gagtaaaacaaaacttacaaaaattgtgatga |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
7100383 |
gagtaaaacaaaacttacaaaaattgtgatga |
7100414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University