View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2852_low_3 (Length: 456)
Name: NF2852_low_3
Description: NF2852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2852_low_3 |
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| [»] scaffold0148 (1 HSPs) |
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| [»] scaffold0280 (2 HSPs) |
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Alignment Details
Target: scaffold0148 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 27858 - 27410
Alignment:
| Q |
1 |
acgaggagaaaaacaacattctgttctgaaaatgacatgaagttcttgaacttgaccatgattaaaacaggaaagccagataaaaaggcaaccgtggaat |
100 |
Q |
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| T |
27858 |
acgaggagaaaaacaacattctgtactgaaaatgacacgaagttcttgaacttgaccatgattaaaacaggaaggccagatataaaggtaaccgtggaat |
27759 |
T |
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| Q |
101 |
ctcnnnnnnnntgcgcagatttgtgccatgggatgtgtccacagt------gccaggcttactcatatgctcaggtccctgataagcagctgcgtggtct |
194 |
Q |
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| T |
27758 |
ctcaaaaaaaatgcgcagatttgtgccatgggatgtgtccacagtcacagtgccaggcttactcatatgctcaagtccctgataagcagcagcgtggtct |
27659 |
T |
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| Q |
195 |
tattccttcaaactgttggatctggacacaaagtttaactactcttaaagaagagtatactagttgggatgatgatcgtagactcattatcctagttgat |
294 |
Q |
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| T |
27658 |
tattccttcaaactgttggatctggacacacagtttaactactcttaaagaagagtatactagttgggatgatgatcgtagactcattatcctagttgat |
27559 |
T |
|
| Q |
295 |
aaattagacataggtatgcatatgatgattaaattagagacatatttctctcttcnnnnnnnnnnatataaaattagaaacaaattcatgattctgaaga |
394 |
Q |
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| T |
27558 |
aaattagacataggtatgcatatgatgattaaattagagacatatttctctcttcttctttttttatataaaattagaaacaaattcatgattctgaaaa |
27459 |
T |
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| Q |
395 |
ttccttttattcatttttgtagaaccaactccaagaacttgtgagccct |
443 |
Q |
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| T |
27458 |
ttccttttattcatttttgtagaaccaactccaagaacttgtgagccct |
27410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 101; Significance: 7e-50; HSPs: 2)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 200 - 332
Target Start/End: Complemental strand, 2617 - 2485
Alignment:
| Q |
200 |
cttcaaactgttggatctggacacaaagtttaactactcttaaagaagagtatactagttgggatgatgatcgtagactcattatcctagttgataaatt |
299 |
Q |
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| T |
2617 |
cttcaaattgttggatctggacacaaagtttaactactcttaaagaagagtatactaattgggattatgatcgtagactcattgtcctagttgataaatc |
2518 |
T |
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| Q |
300 |
agacataggtatgcatatgatgattaaattaga |
332 |
Q |
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| T |
2517 |
agaggtaggtatgcatgtgatgattaaattaga |
2485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 441
Target Start/End: Complemental strand, 2307 - 2255
Alignment:
| Q |
389 |
tgaagattccttttattcatttttgtagaaccaactccaagaacttgtgagcc |
441 |
Q |
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| T |
2307 |
tgaagattccttttattgatatttgcagcaccaactccaagaacttgtgagcc |
2255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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