View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2852_low_30 (Length: 219)

Name: NF2852_low_30
Description: NF2852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2852_low_30
NF2852_low_30
[»] chr6 (3 HSPs)
chr6 (16-201)||(24702282-24702467)
chr6 (61-201)||(8962905-8963045)
chr6 (67-110)||(8956316-8956359)
[»] chr7 (2 HSPs)
chr7 (16-201)||(38159844-38160030)
chr7 (154-201)||(47397304-47397351)
[»] chr4 (2 HSPs)
chr4 (29-201)||(3241356-3241528)
chr4 (61-122)||(27026057-27026118)
[»] chr8 (1 HSPs)
chr8 (20-110)||(9522241-9522331)
[»] chr2 (1 HSPs)
chr2 (67-110)||(9041694-9041737)
[»] chr3 (1 HSPs)
chr3 (64-114)||(19145906-19145956)
[»] chr1 (1 HSPs)
chr1 (64-120)||(26487183-26487239)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 24702282 - 24702467
Alignment:
Q  16 atgaataatatagttaagatcatgcacaaaatagtaagtgataccgggattcttgcagctttgattatgtggaatatttggtgtacaagaaacaagttaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  24702282 atgaataatatagttaagatcatgcacaaaatagtaagtgatatcgggattcttgcagctttgattatgtggaatatttggtgtacaagaaacaaattag 24702381  T
Q  116 ttttttatagtatccaaccaaacatgcattcgacggtcgtaactaatttttcccagcatcatcttgctcaccaggcttttggtact 201  Q
    ||||| ||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24702382 tttttgataatatccaaccaaacatgcattcgacagtcgtaactattttttcccagcatcatcttgctcaccaggcttttggtact 24702467  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 201
Target Start/End: Complemental strand, 8963045 - 8962905
Alignment:
Q  61 gggattcttgcagctttgattatgtggaatatttggtgtacaagaaacaagttaattttttatagtatccaaccaaacatgcattcgacggtcgtaacta 160  Q
    ||||| |||||| ||||||||||||| ||||||| |||||||||||||||  || ||||| | | ||| || ||||| ||||| ||||| ||||  || |    
T  8963045 gggatccttgcacctttgattatgtgaaatattttgtgtacaagaaacaaactagtttttgacaatattcatccaaatatgcactcgactgtcgcgacaa 8962946  T
Q  161 atttttcccagcatcatcttgctcaccaggcttttggtact 201  Q
      |||||||| | || |||||| ||| | ||||||||||||    
T  8962945 tattttcccaacttcttcttgcacacaaagcttttggtact 8962905  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 8956316 - 8956359
Alignment:
Q  67 cttgcagctttgattatgtggaatatttggtgtacaagaaacaa 110  Q
    |||||| ||||||||||||| ||||||| |||||||||||||||    
T  8956316 cttgcacctttgattatgtgaaatattttgtgtacaagaaacaa 8956359  T

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Target: chr7 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 38160030 - 38159844
Alignment:
Q  16 atgaataatatagttaagatcatgcacaaaatagtaagtgataccgggattcttgcagctttgattatgtggaatatttggtgtacaagaaacaagttaa 115  Q
    ||||||||||||| ||||||||| ||||||||||||||||||  ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  38160030 atgaataatatagctaagatcatccacaaaatagtaagtgatgtcggaattcttgcacctttgattatgtggaatatttggtgtacaagaaacaagttag 38159931  T
Q  116 ttttttatagtatccaaccaaacatgcattcgacggtcgtaacta-atttttcccagcatcatcttgctcaccaggcttttggtact 201  Q
    ||||| ||| ||||||||||||||||||||| || || |||||||  |||||| |||||||||||||||||||||||||||||||||    
T  38159930 tttttgataatatccaaccaaacatgcattcaaccgttgtaactatttttttctcagcatcatcttgctcaccaggcttttggtact 38159844  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 47397351 - 47397304
Alignment:
Q  154 gtaactaatttttcccagcatcatcttgctcaccaggcttttggtact 201  Q
    ||||||| ||||||| |||||||||||||||| |||||||||||||||    
T  47397351 gtaactattttttccaagcatcatcttgctcagcaggcttttggtact 47397304  T

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Target: chr4 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 29 - 201
Target Start/End: Complemental strand, 3241528 - 3241356
Alignment:
Q  29 ttaagatcatgcacaaaatagtaagtgataccgggattcttgcagctttgattatgtggaatatttggtgtacaagaaacaagttaattttttatagtat 128  Q
    |||||||||| || |||||||||||||||  ||| ||||||||| | || ||||||||||||||||||||||||| ||||| |||| ||||| ||| |||    
T  3241528 ttaagatcatccaaaaaatagtaagtgatgtcggtattcttgcatcgtttattatgtggaatatttggtgtacaaaaaacatgttagtttttgataatat 3241429  T
Q  129 ccaaccaaacatgcattcgacggtcgtaactaatttttcccagcatcatcttgctcaccaggcttttggtact 201  Q
    ||||||||||||| ||| |||||||| ||||| ||||||||| |||||||||||||| |||||||||||||||    
T  3241428 ccaaccaaacatgtatttgacggtcgcaactattttttcccaacatcatcttgctcatcaggcttttggtact 3241356  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 27026118 - 27026057
Alignment:
Q  61 gggattcttgcagctttgattatgtggaatatttggtgtacaagaaacaagttaatttttta 122  Q
    ||||||||||   ||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  27026118 gggattcttgtgtctttgattatgtgaaatatttggtgtacaagaaacaagtcaatttttta 27026057  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 9522241 - 9522331
Alignment:
Q  20 ataatatagttaagatcatgcacaaaatagtaagtgataccgggattcttgcagctttgattatgtggaatatttggtgtacaagaaacaa 110  Q
    |||||||||||||| | || ||||||||||| |  ||||  ||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  9522241 ataatatagttaaggtaatccacaaaatagtgaaggatattgggatccttgcacctttgattatgtggaatatttggtgtacaagaaacaa 9522331  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 9041694 - 9041737
Alignment:
Q  67 cttgcagctttgattatgtggaatatttggtgtacaagaaacaa 110  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  9041694 cttgcacctttgattatgtggaatatttggtgtacaagaaacaa 9041737  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 19145956 - 19145906
Alignment:
Q  64 attcttgcagctttgattatgtggaatatttggtgtacaagaaacaagtta 114  Q
    ||||||||| |||||||||||||  ||||||| ||||||||||||||||||    
T  19145956 attcttgcacctttgattatgtgtgatatttgatgtacaagaaacaagtta 19145906  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 26487183 - 26487239
Alignment:
Q  64 attcttgcagctttgattatgtggaatatttggtgtacaagaaacaagttaattttt 120  Q
    ||||||||  |||| || ||||||||||||||||| |||||||||||| ||||||||    
T  26487183 attcttgctcctttaatcatgtggaatatttggtgcacaagaaacaagctaattttt 26487239  T

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