View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2852_low_31 (Length: 215)

Name: NF2852_low_31
Description: NF2852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2852_low_31
NF2852_low_31
[»] chr3 (17 HSPs)
chr3 (1-200)||(22457994-22458193)
chr3 (1-200)||(22480975-22481174)
chr3 (5-200)||(22436140-22436335)
chr3 (6-200)||(22635016-22635210)
chr3 (5-200)||(22467460-22467655)
chr3 (3-200)||(22620391-22620588)
chr3 (5-200)||(22629952-22630145)
chr3 (5-200)||(22357511-22357706)
chr3 (6-155)||(22442252-22442401)
chr3 (5-200)||(22430679-22430874)
chr3 (40-196)||(22367468-22367624)
chr3 (5-99)||(22353321-22353415)
chr3 (5-103)||(37930369-37930467)
chr3 (1-153)||(22656559-22656711)
chr3 (41-155)||(30988838-30988952)
chr3 (69-155)||(22628096-22628182)
chr3 (21-153)||(21946445-21946577)
[»] chr1 (4 HSPs)
chr1 (1-153)||(2304979-2305131)
chr1 (1-145)||(34990046-34990190)
chr1 (1-100)||(34976245-34976344)
chr1 (1-100)||(34983356-34983455)


Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-100; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 22457994 - 22458193
Alignment:
Q  1 cacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22457994 cacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaa 22458093  T
Q  101 tgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatac 200  Q
    |||||||||  ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  22458094 tgtttttaccatatcatctttcacaaatccttcagccatccattgccgaatcagtatatttgtaggaactatacaaccttcaggatataatccaaaatac 22458193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 22480975 - 22481174
Alignment:
Q  1 cacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22480975 cacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaa 22481074  T
Q  101 tgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatac 200  Q
    |||||||||  ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  22481075 tgtttttaccatatcatctttcacaaatccttcagccatccattgccgaatcagtatatttgtaggaactatacaaccttcaggatataatccaaaatac 22481174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 5 - 200
Target Start/End: Original strand, 22436140 - 22436335
Alignment:
Q  5 acaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtt 104  Q
    |||||||||| |||||||||||||||| ||||||||||| |||||||||| |||| ||| ||| ||| |||||||||| | ||||| ||||||||||||     
T  22436140 acaactttttactcttccatcaatacttattgaaactacatgcaccaaacttctattgaccaactctattaaatatccttttgcaatatcttccaatgtc 22436239  T
Q  105 tttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatac 200  Q
     || | || || ||||||||||| |||||||| |||||||| ||| ||||| | |||| | |||||||| |  |||||||||||||||||||||||    
T  22436240 cttcccctctcttctttcacgaacccttcagcaatccattggcgagtcaatgtttttgaacgaactatatagtcttcaggatataatccaaaatac 22436335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 6 - 200
Target Start/End: Original strand, 22635016 - 22635210
Alignment:
Q  6 caactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgttt 105  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||  |||||| |||  ||||||||| |||||||| ||||| |||||      
T  22635016 caactttttactcttccatcaatactagttgaaactacttgcaccaaacttctatggatcaactctactaaatatccttctgcaacctcttcaaatgtcc 22635115  T
Q  106 ttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatac 200  Q
    || | || || ||||||||||| |||||||| |||||||| ||| ||||| | |||| | |||||||| |  |||||||||||||||||||||||    
T  22635116 ttcccctgtcttctttcacgaacccttcagcaatccattggcgagtcaatgtttttgaacgaactatatagtcttcaggatataatccaaaatac 22635210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 5 - 200
Target Start/End: Original strand, 22467460 - 22467655
Alignment:
Q  5 acaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtt 104  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||| ||||  |||||| ||| |||||||||| || ||||| |||||||||||     
T  22467460 acaactttttactcttccatcaatacttattgaaactacttgcaccaaacttctatggatcaactctattaaatatccttcagcaacctcttccaatgtc 22467559  T
Q  105 tttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatac 200  Q
     |  | || || || ||||| || |||||||| |||||||| ||| ||||  | |||| | |||||||| |  |||||||||||||||||||||||    
T  22467560 ctccccctgtcttccttcacaaacccttcagcaatccattggcgagtcaacgtctttgaatgaactatatagtcttcaggatataatccaaaatac 22467655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 3 - 200
Target Start/End: Original strand, 22620391 - 22620588
Alignment:
Q  3 caacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatg 102  Q
    ||||||||||||| | ||||||| || || | ||||  |||||||||||||| ||||  |||||| |||||||| ||||| |||||||| |||||||| |    
T  22620391 caacaactttttgtttttccatcgattcttagtgaagatacttgcaccaaacttctatggatcaactctgttaagtatccttctgcaacttcttccaaag 22620490  T
Q  103 tttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatac 200  Q
    | ||  | || || ||||| || || |||||||| |||||||||||||||||| | |||| |  |||| || || |||| ||||||||||||||||||    
T  22620491 tattccccctttcttcttttacaaacccttcagctatccattgccgaatcaatctctttgaatcaactttataatcttctggatataatccaaaatac 22620588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 5 - 200
Target Start/End: Original strand, 22629952 - 22630145
Alignment:
Q  5 acaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtt 104  Q
    |||||||||| |||||||||  |||||  ||||||||||||||||||||| ||||| || ||| ||| |||||||||| ||| |||| ||||||||||||    
T  22629952 acaactttttactcttccat--atacttgttgaaactacttgcaccaaacttctacggaccaactctattaaatatccttctccaacctcttccaatgtt 22630049  T
Q  105 tttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatac 200  Q
     || |  |  | |||||||| || |||||||| |||||||| ||| |||| |  |||| | |||||||| |  |||||||||| ||||||||||||    
T  22630050 cttcccttgacttctttcacaaacccttcagcgatccattggcgagtcaacacctttgaacgaactatatagtcttcaggatagaatccaaaatac 22630145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 200
Target Start/End: Original strand, 22357511 - 22357706
Alignment:
Q  5 acaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtt 104  Q
    ||||| |||| |||||||||||||||| |||||| ||||||||||||||| ||||   || || ||| |||||||||| |||||||| |||||||  |||    
T  22357511 acaacgttttactcttccatcaatactgattgaatctacttgcaccaaacttctatgtattaactcttttaaatatccttctgcaacctcttccatcgtt 22357610  T
Q  105 tttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatac 200  Q
     || | | ||  | |||||| || |||||||| |||||||| ||| ||||| | |||| | ||||| || |  |||||||||||||||||||||||    
T  22357611 ctttccccatattgtttcacaaacccttcagcaatccattgtcgagtcaatgtctttgaatgaactttatagtcttcaggatataatccaaaatac 22357706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 6 - 155
Target Start/End: Original strand, 22442252 - 22442401
Alignment:
Q  6 caactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgttt 105  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||||||| ||||| ||| ||  || |||||||||| |||||||| | |||||||||      
T  22442252 caactttttactcttccatcaatactggttgaaactacttgcaccaaacttctacagattaacacttttaaatatccttctgcaaccttttccaatgtcc 22442351  T
Q  106 ttacgctatcatctttcacgaatccttcagccatccattgccgaatcaat 155  Q
    || | | ||  |||||||| || |||||||| |||||||| ||| |||||    
T  22442352 tttccccatattctttcacaaacccttcagctatccattgacgagtcaat 22442401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 5 - 200
Target Start/End: Original strand, 22430679 - 22430874
Alignment:
Q  5 acaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtt 104  Q
    ||||||| || |||||||||||||||| |||||| ||||||||||||||| ||||  |||||| ||| |||||||||| |||||||| |||| ||||||     
T  22430679 acaacttcttactcttccatcaatacttattgaatctacttgcaccaaacttctatggatcaactctattaaatatccttctgcaacctctttcaatgtc 22430778  T
Q  105 tttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaaatac 200  Q
     || |  | |  |||||||| || |||||||| |||||||| | | | ||| | |||| |  ||||||| |  ||| |||||||||||||||||||    
T  22430779 cttcccgttttttctttcacaaacccttcagcaatccattgacaagttaatgtctttgaataaactatatagtctttaggatataatccaaaatac 22430874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 40 - 196
Target Start/End: Original strand, 22367468 - 22367624
Alignment:
Q  40 ctacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcagccat 139  Q
    ||||| ||||||||| ||||| |||||| ||| |||||| ||| |||||||| |||||||||||  || | || || |||||||| || |||||||| ||    
T  22367468 ctactcgcaccaaacttctacggatcaactctattaaatgtccttctgcaacctcttccaatgtcattcccctttcttctttcacaaacccttcagcaat 22367567  T
Q  140 ccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaa 196  Q
    |||||| ||| |||||||||||| | ||||  |  |  |||||||||||||||||||    
T  22367568 ccattgacgagtcaatatatttgaacgaacatttgagtcttcaggatataatccaaa 22367624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 22353321 - 22353415
Alignment:
Q  5 acaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttcca 99  Q
    |||||||||| |||||||||||||||| | |||| ||||||||||||||| ||||  ||| || ||| |||||||||| |||||||| |||||||    
T  22353321 acaactttttactcttccatcaatactgactgaatctacttgcaccaaacttctatggattaactcttttaaatatccttctgcaacctcttcca 22353415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 37930369 - 37930467
Alignment:
Q  5 acaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgt 103  Q
    |||||||||| |||||||||||||||   ||||||||||||||||||||| ||||| ||| || ||| |||||||||| || ||||| | |||||||||    
T  37930369 acaactttttactcttccatcaataccggttgaaactacttgcaccaaacttctacagattaactcttttaaatatccttccgcaaccttttccaatgt 37930467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 22656559 - 22656711
Alignment:
Q  1 cacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaa 100  Q
    ||||||||||||| | | |||| ||||| |||| |||   |||||| ||||||| ||  |  ||||| |||||||||||||| |||||||| ||||||||    
T  22656559 cacaacaacttttagtttttccgtcaattctaactgaggatacttgtaccaaacatcggcgaatcaactctgttaaatatccttctgcaacttcttccaa 22656658  T
Q  101 tgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatca 153  Q
     |||||  | || || |||||||| || |||||||| ||||||||||| ||||    
T  22656659 agttttccccctttcttctttcacaaaaccttcagctatccattgccgtatca 22656711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 155
Target Start/End: Original strand, 30988838 - 30988952
Alignment:
Q  41 tacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcagccatc 140  Q
    |||||||||||| | ||||  |||||| |||||||||||||| |||||||| |||||||| || ||  | || || || |||||||| |||||||| | |    
T  30988838 tacttgcaccaagcttctatggatcaactctgttaaatatccttctgcaacgtcttccaaagtcttccctctttcctccttcacgaacccttcagctacc 30988937  T
Q  141 cattgccgaatcaat 155  Q
    ||||| |||||||||    
T  30988938 cattgtcgaatcaat 30988952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 22628096 - 22628182
Alignment:
Q  69 tctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaat 155  Q
    |||||||||||||| ||||  || ||||| || |||||| | || || |||||||| ||||||||||| ||| |||| |||||||||    
T  22628096 tctgttaaatatccttctgtgacttcttcgaaagtttttcccctttcttctttcacaaatccttcagctatcaattgtcgaatcaat 22628182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 21946577 - 21946445
Alignment:
Q  21 ccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctt 120  Q
    |||||||| |||| ||||  |||||| ||||  | ||||  |||||| |||||||||||||| ||||| || |||||||| || ||  | || || || |    
T  21946577 ccatcaattctaagtgaagatacttgaaccaggcttctatggatcaactctgttaaatatccttctgccacttcttccaaagtcttccctctttcctcct 21946478  T
Q  121 tcacgaatccttcagccatccattgccgaatca 153  Q
    |||| || |||||||| |||||||| |||||||    
T  21946477 tcacaaacccttcagctatccattgtcgaatca 21946445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 2304979 - 2305131
Alignment:
Q  1 cacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaa 100  Q
    ||||||||||||| | | |||||||||| |||| |||   |||||||||||||| || ||  ||||| |||| ||||||||| |||||||| ||||||||    
T  2304979 cacaacaacttttagattttccatcaatgctaactgaggatacttgcaccaaacttcgacgaatcaactctgataaatatccttctgcaacttcttccaa 2305078  T
Q  101 tgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatca 153  Q
     || ||  | || || || ||||| || |||||||| ||||| || |||||||    
T  2305079 agtcttcccactttcctccttcacaaacccttcagctatccactgtcgaatca 2305131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 34990190 - 34990046
Alignment:
Q  1 cacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaa 100  Q
    ||||||||||| | | | |||||||||| |||| |||   |||||||||||||| |||||  ||||| |||||||||||||  ||| |||| ||||||||    
T  34990190 cacaacaacttctagtttttccatcaatgctaactgaggatacttgcaccaaacttctacgaatcaactctgttaaatatctttcttcaacttcttccaa 34990091  T
Q  101 tgtttttacgctatcatctttcacgaatccttcagccatccattg 145  Q
     || ||  | || || |||||||| || |||||||| ||||||||    
T  34990090 agtcttcccactttcctctttcacaaacccttcagctatccattg 34990046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 34976344 - 34976245
Alignment:
Q  1 cacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaa 100  Q
    ||||||||||||| |   |||||||||| |||| |||   |||||||||||||| || ||  ||||| |||||||||||||| | |||||| ||||||||    
T  34976344 cacaacaacttttaggctttccatcaattctaactgaggatacttgcaccaaacttcgacgaatcaactctgttaaatatccttttgcaacttcttccaa 34976245  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 34983455 - 34983356
Alignment:
Q  1 cacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatcttccaa 100  Q
    ||||||||||||| |   |||||||||| |||| |||   |||||||||||||| || ||  ||||| |||||||||||||| | |||||| ||||||||    
T  34983455 cacaacaacttttaggctttccatcaattctaactgaggatacttgcaccaaacttcgacgaatcaactctgttaaatatccttttgcaacttcttccaa 34983356  T

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