View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2852_low_6 (Length: 384)
Name: NF2852_low_6
Description: NF2852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2852_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 9 - 367
Target Start/End: Original strand, 13886754 - 13887112
Alignment:
| Q |
9 |
gagatgaagatgcatactggtggatcctgagtaccgaaaaatattttagggctaccggaaaatccgagattggaaagataatggtggttgatttaactat |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13886754 |
gagaggaagatgcatactggtggatcctgagtaccgaaaaatattttagggctaccggaaaatccgagattggaaagataatggtggttgatttaactat |
13886853 |
T |
|
| Q |
109 |
gcgaggtcgggctctccaatggtggttatggtggttttcctgtcacccgcgaccaagttgggacacattcacgacggcacttttatggcgcttcaagccg |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13886854 |
gcgaggtcgggctctccaatggtggttatggtggttttcctgtcacccgcgactaagttgggacacattcacgacggcacttttatggcgcttcaagccg |
13886953 |
T |
|
| Q |
209 |
gaatggcgacaccttctacctgtatcagacgaagaaattgagccaacttctgaatcgttgaaatctacagaatcttcttccttccttgaagattcagtta |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13886954 |
gaatggcgacaccttctacctgtatcagacgaagaaattgagccaacttctgaatcgttgaaatctacagaatcttcttccttccttgaagattcagtta |
13887053 |
T |
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| Q |
309 |
ctgatcctatctccacaatttttggtgacccgaggaacccgacgttggcgcacatccct |
367 |
Q |
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| T |
13887054 |
ctgatcctatctccacaatttttggtgacccgaggaacccgacgttggcgcacatccct |
13887112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 14 - 365
Target Start/End: Original strand, 30452914 - 30453262
Alignment:
| Q |
14 |
gaagatgcatactggtggatcctgagtaccgaaaaatattttagggctaccggaaaatccgagattggaaagataatggtggttgatttaactatgcgag |
113 |
Q |
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|||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| ||| |||||| ||||||| |||||| |||||||||| |
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| T |
30452914 |
gaagatgcatactggtggatcctgtgtactgaacaatattttagggctaccggaaaatccgaggttgcaaagatgatggtggctgatttgactatgcgag |
30453013 |
T |
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| Q |
114 |
gtcgggctctccaatggtggttatggtggttttcctgtcacccgcgaccaagttgggacacattcacgacggcacttttatggcgcttcaagccggaatg |
213 |
Q |
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| T |
30453014 |
ggcg---tctcgaatggtggttgtggtggtcgccccgtcacccgcaatcaaattgggacacattcaccacggcactgttttggcgcttcaagccggaatg |
30453110 |
T |
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| Q |
214 |
gcgacaccttctacctgtatcagacgaagaaattgagccaacttctgaatcgttgaaatctacagaatcttcttccttccttgaagattcagttactgat |
313 |
Q |
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||||||||| |||||| ||| ||||| |||||||||||||||||| || | |||||||| |||||| | ||| ||||||||||||||||||| | ||| |
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| T |
30453111 |
gcgacacctgctacctatattggacgacgaaattgagccaacttctaaaccattgaaatccacagaagcaactttcttccttgaagattcagttgccgat |
30453210 |
T |
|
| Q |
314 |
cctatctccacaatttttggtgacccgaggaacccgacgttggcgcacatcc |
365 |
Q |
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||| | || || ||||||||||||| ||| |||| ||||||||||||| |
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| T |
30453211 |
gctagccttacggttgttggtgacccgagaaacacgacattggcgcacatcc |
30453262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 6102165 - 6102232
Alignment:
| Q |
195 |
ggcgcttcaagccggaatggcgacaccttctacctgtatcagacgaagaaattgagccaacttctgaa |
262 |
Q |
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||||||| |||| |||||||||||||||||||||| ||| || |||||||| ||||||||||||||| |
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| T |
6102165 |
ggcgctttaagctggaatggcgacaccttctacctatattggatgaagaaatggagccaacttctgaa |
6102232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 9 - 141
Target Start/End: Original strand, 24733836 - 24733968
Alignment:
| Q |
9 |
gagatgaagatgcatactggtggatcctgagtaccgaaaaatattttagggctaccggaaaatccgagattggaaagataatggtggttgatttaactat |
108 |
Q |
| |
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||||||||||||||||| |||||||||| | ||| ||| ||||||| ||||| || ||||||| ||| ||| |||||| |||||||||||||| ||||| |
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| T |
24733836 |
gagatgaagatgcataccggtggatcctaactactgaacaatatttcagggcaacacgaaaatcagaggttgcaaagatgatggtggttgatttgactat |
24733935 |
T |
|
| Q |
109 |
gcgaggtcgggctctccaatggtggttatggtg |
141 |
Q |
| |
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| T |
24733936 |
gagaggtcctgctcttcgatggtggctatggtg |
24733968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 192 - 265
Target Start/End: Original strand, 24733962 - 24734035
Alignment:
| Q |
192 |
tatggcgcttcaagccggaatggcgacaccttctacctgtatcagacgaagaaattgagccaacttctgaatcg |
265 |
Q |
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| T |
24733962 |
tatggtgctttaagccggaatggcgacaccttctacctatattggatgaagaaatggagccaacttctgaatcg |
24734035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 9 - 95
Target Start/End: Original strand, 44762176 - 44762262
Alignment:
| Q |
9 |
gagatgaagatgcatactggtggatcctgagtaccgaaaaatattttagggctaccggaaaatccgagattggaaagataatggtgg |
95 |
Q |
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||||||||||||| |||||||||||||| ||| |||| ||||| ||||| ||||||||||||||||| | |||||| ||||||| |
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| T |
44762176 |
gagatgaagatgcctactggtggatcctctctactgaaagttatttcagggcaaccggaaaatccgagatggcaaagatgatggtgg |
44762262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 127
Target Start/End: Original strand, 33328466 - 33328545
Alignment:
| Q |
48 |
aatattttagggctaccggaaaatccgagattggaaagataatggtggttgatttaactatgcgaggtcgggctctccaa |
127 |
Q |
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||||||| ||||| || |||||||||||| | ||||| ||||||| |||||| |||||| ||||||||||||||||| |
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| T |
33328466 |
aatatttcagggcgacgggaaaatccgaggtgccaaagaagatggtggctgatttcactatgtgaggtcgggctctccaa |
33328545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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