View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2852_low_7 (Length: 371)
Name: NF2852_low_7
Description: NF2852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2852_low_7 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 20415759 - 20416110
Alignment:
| Q |
1 |
caagaaaagtgatgtgtttcaaagtgtttaagaagattagaatgctagtttagaatgaaaatggtaaaatgattggcaaattaagaacaaatggaagagg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
20415759 |
caagaaaagtgatgtgtttcaaagtgtttaagaagattagaatgctagtttagaatgaaaatggtgaaatgattggcaaattaagaacaaatggaagaag |
20415858 |
T |
|
| Q |
101 |
tgagtatacatctagtgagtttaaggactttttcttatcaagtggcataaattatgaagtaactgctccctacactccacaacacaatgacacatcaaaa |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
20415859 |
tgggtatacatctagtgagtttaaggactttttcttatcaagtggcataaattatgaagtaactgctccctacactccacaacacaatggcacatcaaaa |
20415958 |
T |
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| Q |
201 |
agaaagaagataaccatagtcaccgtgatgagaagcatgtcgaaacaaaaggaggtacatcattgcttgcggggtgaagcagctgctactgcaactcacc |
300 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
20415959 |
agaaagaaaataaccatagtcacggtgatgagaagcatgtcgaaacaaaaggaaatacatcattgcttgcggggtaaagcagctgctactgcaactcacc |
20416058 |
T |
|
| Q |
301 |
tcataaattggtgtcctacaaagaagtttcaagataaaacactagaagaagc |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20416059 |
tcataaattggtgtcctacaaagaagtttcaagataaaacactagaagaagc |
20416110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 24 - 189
Target Start/End: Original strand, 9505679 - 9505844
Alignment:
| Q |
24 |
gtgtttaagaagattagaatgctagtttagaatgaaaatggtaaaatgattggcaaattaagaacaaatggaagaggtgagtatacatctagtgagttta |
123 |
Q |
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| T |
9505679 |
gtgtttaagaagtttagactgctagttcaaaatgaaagtggtgaaatgattagcaggctaagaactgatggaggaggtgagtatacttccaatgagttca |
9505778 |
T |
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| Q |
124 |
aggactttttcttatcaagtggcataaattatgaagtaactgctccctacactccacaacacaatg |
189 |
Q |
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| T |
9505779 |
atgacttttgctcatcaaatggcataaatcatgaagtcactgcaccatacacacctcaacacaatg |
9505844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 189
Target Start/End: Complemental strand, 16838957 - 16838792
Alignment:
| Q |
24 |
gtgtttaagaagattagaatgctagtttagaatgaaaatggtaaaatgattggcaaattaagaacaaatggaagaggtgagtatacatctagtgagttta |
123 |
Q |
| |
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|||||||||||| ||||| |||||||| | ||| ||| |||| |||||||| ||| ||||||| ||||| ||||||||||||| || | |||||| | |
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| T |
16838957 |
gtgtttaagaagtttagactgctagttcaaaatcaaagtggtgaaatgattagcaggctaagaactcatggaggaggtgagtatacttccaatgagttca |
16838858 |
T |
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| Q |
124 |
aggactttttcttatcaagtggcataaattatgaagtaactgctccctacactccacaacacaatg |
189 |
Q |
| |
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| T |
16838857 |
atgatttttgttcatcaaatggcataaatcatgaagtcactgcaccatacacacctcaacacaatg |
16838792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 24 - 189
Target Start/End: Complemental strand, 368583 - 368418
Alignment:
| Q |
24 |
gtgtttaagaagattagaatgctagtttagaatgaaaatggtaaaatgattggcaaattaagaacaaatggaagaggtgagtatacatctagtgagttta |
123 |
Q |
| |
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|||||||||||| ||||| |||||||| | ||||||| |||| |||||||| ||| ||||||| ||||| | ||||||||||| || | |||||| | |
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| T |
368583 |
gtgtttaagaagtttagattgctagttcaaaatgaaagtggtgaaatgattagcaggctaagaactgatggagggggtgagtatacttccaatgagttca |
368484 |
T |
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| Q |
124 |
aggactttttcttatcaagtggcataaattatgaagtaactgctccctacactccacaacacaatg |
189 |
Q |
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| T |
368483 |
atgatttttgctaatcaaatggcataaatcatgaagtcactacaccatacatacctcaacacaatg |
368418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 187
Target Start/End: Complemental strand, 45495158 - 45494995
Alignment:
| Q |
24 |
gtgtttaagaagattagaatgctagtttagaatgaaaatggtaaaatgattggcaaattaagaacaaatggaagaggtgagtatacatctagtgagttta |
123 |
Q |
| |
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|||||||||||| ||||| | |||||| | ||||||| |||| |||||||| || ||||||| ||||| ||||||||||||| || | |||||| | |
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| T |
45495158 |
gtgtttaagaagtttagactactagttcaaaatgaaagtggtgaaatgattatcaggctaagaactgatggatgaggtgagtatacttccaatgagttca |
45495059 |
T |
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| Q |
124 |
aggactttttcttatcaagtggcataaattatgaagtaactgctccctacactccacaacacaa |
187 |
Q |
| |
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| T |
45495058 |
atgatttttgctcatcaaatagcataaatcatgaagtcactgcaccatacacacctcaacacaa |
45494995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 187
Target Start/End: Complemental strand, 45502900 - 45502737
Alignment:
| Q |
24 |
gtgtttaagaagattagaatgctagtttagaatgaaaatggtaaaatgattggcaaattaagaacaaatggaagaggtgagtatacatctagtgagttta |
123 |
Q |
| |
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|||||||||||| ||||| | |||||| | ||||||| |||| |||||||| || ||||||| ||||| ||||||||||||| || | |||||| | |
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| T |
45502900 |
gtgtttaagaagtttagactactagttcaaaatgaaagtggtgaaatgattatcaggctaagaactgatggatgaggtgagtatacttccaatgagttca |
45502801 |
T |
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| Q |
124 |
aggactttttcttatcaagtggcataaattatgaagtaactgctccctacactccacaacacaa |
187 |
Q |
| |
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| || |||| || ||||| | |||||||| ||||||| ||||| || ||||| || |||||||| |
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| T |
45502800 |
atgatttttgctcatcaaatagcataaatcatgaagtcactgcaccatacacacctcaacacaa |
45502737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 189
Target Start/End: Original strand, 62880 - 63045
Alignment:
| Q |
24 |
gtgtttaagaagattagaatgctagtttagaatgaaaatggtaaaatgattggcaaattaagaacaaatggaagaggtgagtatacatctagtgagttta |
123 |
Q |
| |
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|||||||| ||| ||||| |||||||| | || |||| |||| || ||||| | | ||||||| ||||| ||||||||||||| || | |||||| | |
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| T |
62880 |
gtgtttaaaaagtttagactgctagttcaaaacgaaagtggtgaagtgattagtaggctaagaactgatggaggaggtgagtatacttccactgagttca |
62979 |
T |
|
| Q |
124 |
aggactttttcttatcaagtggcataaattatgaagtaactgctccctacactccacaacacaatg |
189 |
Q |
| |
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| ||||||| || ||| | |||||||||| ||||||||||| | || |||| || |||||||||| |
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| T |
62980 |
atgacttttgctcatcgaatggcataaatcatgaagtaactacaccatacatacctcaacacaatg |
63045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 352
Target Start/End: Original strand, 9038534 - 9038656
Alignment:
| Q |
230 |
gagaagcatgtcgaaacaaaaggaggtacatcattgcttgcggggtgaagcagctgctactgcaactcacctcataaattggtgtcctacaaagaagttt |
329 |
Q |
| |
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||||||||| | |||||||||| || | | ||||| ||| ||||||||||||| ||||||||||| || |||||||| | | | | ||||||| || |
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| T |
9038534 |
gagaagcatttagaaacaaaagcagatgcttcattatttgtggggtgaagcagcagctactgcaacatacttcataaatagaagccttgcaaagaaattg |
9038633 |
T |
|
| Q |
330 |
caagataaaacactagaagaagc |
352 |
Q |
| |
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|||||||| |||| ||||||||| |
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| T |
9038634 |
caagataagacaccagaagaagc |
9038656 |
T |
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