View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2853-Insertion-1 (Length: 859)

Name: NF2853-Insertion-1
Description: NF2853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2853-Insertion-1
NF2853-Insertion-1
[»] chr4 (2 HSPs)
chr4 (178-859)||(53249522-53250203)
chr4 (7-140)||(53249351-53249484)


Alignment Details
Target: chr4 (Bit Score: 663; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 663; E-Value: 0
Query Start/End: Original strand, 178 - 859
Target Start/End: Original strand, 53249522 - 53250203
Alignment:
Q  178 gtttacaagttgaacagatttaacagcattcagtattcaccatttagtacactcaatcgttccggtgccatcgtcaagtacaaacttaaattcagtaatc 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53249522 gtttacaagttgaacagatttaacagcattcagtattcaccatttagtacactcaatcgttccggtgccatcgtcaagtacaaacttaaattcagtaatc 53249621  T
Q  278 tgtccagatttgttgcaaaccctaccaacaagagtaacctgagcacaaaattgtgagaacaagaaaaaccacaaatcgtaattcacaatagaagattcga 377  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53249622 tgtccagatttgttgcaaaccctaccaacaagagtaacctgaacacaaaattgtgagaacaagaaaaaccacaaatcgtaattcacaatagaagattcga 53249721  T
Q  378 gtaacgcacggtgttaacgccaacaccgtcaatagtaagaccggttctatcatcacttgattgaagagcatggttgatctgcttgatcgtcagcggaagc 477  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53249722 gtaacgcacggtgttaacgccaacaccgtcaatagtaagaccggttctatcatcacttgattgaagagcatggttgatctgcttgatcgtcagcggaagc 53249821  T
Q  478 aaagtttgactttcgcgattctgaaaaagcaaataataaaccctaaaccacatcaattacatgaaaatcaaatcaaaaccctaaatcctaaacctagcgt 577  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53249822 aaagtttgactttcgcgattctgaaaaagcaaataataaaccctaaaccacatcaattacatgaaaatcaaatcaaaaccctaaatcctaaacctagcgt 53249921  T
Q  578 gtctaattgaagttgcggttaagattattaagaagaaaatggagagtgagaactgagaagaaccttggagggagtgagagaggattcaccgccttgattg 677  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53249922 gtctaattgaagttgcggttaagattattaagaagaaaatggagagtgagaactgagaagaaccttggagggagtgagagaggattcaccgccttgattg 53250021  T
Q  678 ctctgagaaggcatgaaaccgccgccggcgaangcggcgttgccgtcgaactgattcgcatgcatggtgccgattttccgcgattgaaatgaagtgattg 777  Q
     ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53250022 gtctgagaaggcatgaaaccgccgccggcgaaggcggcgttgccgtcgaactgattcgcatgcatggtgccgattttccgcgattgaaatgaagtgattg 53250121  T
Q  778 aacagaagtttcgaatttcacaattcgctgtgtcgatatttaatatctaaataattggtttcccgccatttttcttccctaa 859  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53250122 aacagaaatttcgaatttcacatttcgctgtgtcgatatttaatatctaaataattggtttcccgccatttttcttccctaa 53250203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 53249351 - 53249484
Alignment:
Q  7 agtatagtactaaatgcaatacaataaggcaacatacaatcccgtnnnnnnnnggtaacatacatgatactctccactgccattgcatcagcaggttcgt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||        ||||||||||| |||||||||||||||||||||||||||||||||||    
T  53249351 agtatagtactaaatgcaatacaataaggcaacatacaatcccgtaaagaaaaggtaacatacaagatactctccactgccattgcatcagcaggttcgt 53249450  T
Q  107 gaagcctgcaagcagacaaaaactcatcgttcac 140  Q
    ||||||||||||||||||||||||||||||||||    
T  53249451 gaagcctgcaagcagacaaaaactcatcgttcac 53249484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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